LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc241703g00050	ATGGAGATGCAACAGCTGCTTAGCATGGGCTTCCCCGACGAGCTAGCAGCCCAAGCCTTGGCTGCCACCGGCGGAAAGTCCACTGTCAAAGCCACCGAGTGGATCCTGTCTCACAAATCAAACACTTCACCTTCGACGCAACCCAAGATAGAACGGTTTTTCCTGTCGCAAAGCACAAGCCCAGAAGAAGGGCAAGCAAAAGCAATTGAGGAAGAGCAACAACAAGAGGTTGAGGCCTCCCCACACTCACTCTCAAAACGCCCCAGATCAGTACCCTCTTCAAATCCTCAATCTTCCTTCTTCTTCACCCCTCTTCGCCCTTCCAAGAAGCACAACCACCAACCCTTATACGAGCGCCTCCGCCCCACAACCCTCGACCACGTCCTTGGCCAGGACCATCTCCTCTCCCCCAATTCCCTCCTTCCCTCCGCCATCCACCGCAACCGTCTCCCTTCCATCCTCCTCTGGGGCCCCCCTGGCACCGGCAAGACCACCATCGCCAGAGCCATCGTCAACTCCTTCCCCCACCAGCAATGCCCTTGCTATCGCTTTGTCTCCTTATCCGCCGTCACCAGCGGCGTCAAGGATGTCAGGGACGCCGTGGATGAGGCCAGAAAGCTCAGAGTGAAGAGCAACCAGAGAACCGTGCTGTTCGTGGATGAGGTTCACAGATTCAACAAGTCCCAGCAGGACTCTTTCTTGCCCGTCATTGAAGATGGCAGCATTGTATTCGTTGGAGCCACCACAGAGAACCCTTCATTCCACCTCATCACACCTCTTTTGTCACGCTGCCGCCTCCTTACCCTTAACCCTCTCAAGCCCCACCATGTTTCCTTGCTTCTCAGAAGGGCTGTCGATGACTCCGACAAAGGCTTGACTCACAGCGCTGGTTGTCAAGTTGATGTCAGCCAGGATGTTCTGGATTTCATAGGAAGCAACTGTGACGGGGATGCTCGAGTCGCCTTGAATGCTCTCGAGATAGCTGCTGTTACTGCTGCTGCAAGGCTCCAACAACCTGCTAACCACTCCAAAGAGGAGCAATACAAGGCTGCTGTTACACTTGATGACGCAAAGGAAGCACTTCAGTGCAAGCATCTTGCTTATGATAAAGCTGGGGAAGAGCACTATAATCTGATCAGCGCGCTCCACAAATCCATGAGGGGGAGTGATGCCAATGCAGGGATTTATTGGCTGGCAAGAATGCTGGAAGGAGGGGAAGAGCCTCTCTACATTGCGCGCAGGCTCATTAGGTTTGCGAGTGAGGATGTTGGTTTGGCTGATCCCTCGGCTCTCAATCAGGCTGTTTCATGCTATCAGGCTTGCCACTTCCTGGGAATGCCAGAGTGCAATGTCATTCTTGCGCAGTGTGTTGCCTACTTGGCCTTGGCTCCTAAATCTGTCTCTGTTTACAAAGCAATAGGAGCTGCTCAAAAGGTGGTTAGGGAATCTGTTGGGCAGAATGAAGGGGTGCCTCTTCATCTCAGGAATGCGCCAACAAAACTAATGAAAGACATTGGGTATGGCAAGGGATACATATATCCTCCAGACAACCCTTTATCAACACAGACGTATTTGCCTCCCTCACTAGCAGGCTACAAGTTCCTTGATTGGCCTACCACCAACAAGAATGCTTCTGATGATGAAGCAAAGCCCTCCACATCTGGGACTGCCAGTATATAG	1680	0.5256	MEMQQLLSMGFPDELAAQALAATGGKSTVKATEWILSHKSNTSPSTQPKIERFFLSQSTSPEEGQAKAIEEEQQQEVEASPHSLSKRPRSVPSSNPQSSFFFTPLRPSKKHNHQPLYERLRPTTLDHVLGQDHLLSPNSLLPSAIHRNRLPSILLWGPPGTGKTTIARAIVNSFPHQQCPCYRFVSLSAVTSGVKDVRDAVDEARKLRVKSNQRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFVGATTENPSFHLITPLLSRCRLLTLNPLKPHHVSLLLRRAVDDSDKGLTHSAGCQVDVSQDVLDFIGSNCDGDARVALNALEIAAVTAAARLQQPANHSKEEQYKAAVTLDDAKEALQCKHLAYDKAGEEHYNLISALHKSMRGSDANAGIYWLARMLEGGEEPLYIARRLIRFASEDVGLADPSALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSVSVYKAIGAAQKVVRESVGQNEGVPLHLRNAPTKLMKDIGYGKGYIYPPDNPLSTQTYLPPSLAGYKFLDWPTTNKNASDDEAKPSTSGTASI	559

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc241703g00050	559	FunFam	AAA-type ATPase family protein	272	346	-	-
	Stsc241703g00050	559	Pfam	ATPase family associated with various cellular activities (AAA)	153	265	IPR003959	GO:0005524\|GO:0016887
	Stsc241703g00050	559	PANTHER	WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER	1	547	-	-
	Stsc241703g00050	559	CDD	HLD_clamp_RarA	272	362	-	-
	Stsc241703g00050	559	Gene3D	-	106	270	IPR027417	-
	Stsc241703g00050	559	MobiDBLite	consensus disorder prediction	78	105	-	-
	Stsc241703g00050	559	FunFam	Replication-associated recombination protein A	108	271	-	-
	Stsc241703g00050	559	Pfam	AAA C-terminal domain	299	387	IPR032423	-
	Stsc241703g00050	559	Gene3D	-	466	550	-	-
	Stsc241703g00050	559	Gene3D	-	362	465	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc241703g00050	Stsc-Chr241703	166261	167940	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc241703g00050	115	388	Core DNA Replication Machinery Family	AT1G77470	24.643	4.02e-11	63.2

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc241703g00050	K07478		-	gmx:100799257	804.283

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