Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241703g00050 ATGGAGATGCAACAGCTGCTTAGCATGGGCTTCCCCGACGAGCTAGCAGCCCAAGCCTTGGCTGCCACCGGCGGAAAGTCCACTGTCAAAGCCACCGAGTGGATCCTGTCTCACAAATCAAACACTTCACCTTCGACGCAACCCAAGATAGAACGGTTTTTCCTGTCGCAAAGCACAAGCCCAGAAGAAGGGCAAGCAAAAGCAATTGAGGAAGAGCAACAACAAGAGGTTGAGGCCTCCCCACACTCACTCTCAAAACGCCCCAGATCAGTACCCTCTTCAAATCCTCAATCTTCCTTCTTCTTCACCCCTCTTCGCCCTTCCAAGAAGCACAACCACCAACCCTTATACGAGCGCCTCCGCCCCACAACCCTCGACCACGTCCTTGGCCAGGACCATCTCCTCTCCCCCAATTCCCTCCTTCCCTCCGCCATCCACCGCAACCGTCTCCCTTCCATCCTCCTCTGGGGCCCCCCTGGCACCGGCAAGACCACCATCGCCAGAGCCATCGTCAACTCCTTCCCCCACCAGCAATGCCCTTGCTATCGCTTTGTCTCCTTATCCGCCGTCACCAGCGGCGTCAAGGATGTCAGGGACGCCGTGGATGAGGCCAGAAAGCTCAGAGTGAAGAGCAACCAGAGAACCGTGCTGTTCGTGGATGAGGTTCACAGATTCAACAAGTCCCAGCAGGACTCTTTCTTGCCCGTCATTGAAGATGGCAGCATTGTATTCGTTGGAGCCACCACAGAGAACCCTTCATTCCACCTCATCACACCTCTTTTGTCACGCTGCCGCCTCCTTACCCTTAACCCTCTCAAGCCCCACCATGTTTCCTTGCTTCTCAGAAGGGCTGTCGATGACTCCGACAAAGGCTTGACTCACAGCGCTGGTTGTCAAGTTGATGTCAGCCAGGATGTTCTGGATTTCATAGGAAGCAACTGTGACGGGGATGCTCGAGTCGCCTTGAATGCTCTCGAGATAGCTGCTGTTACTGCTGCTGCAAGGCTCCAACAACCTGCTAACCACTCCAAAGAGGAGCAATACAAGGCTGCTGTTACACTTGATGACGCAAAGGAAGCACTTCAGTGCAAGCATCTTGCTTATGATAAAGCTGGGGAAGAGCACTATAATCTGATCAGCGCGCTCCACAAATCCATGAGGGGGAGTGATGCCAATGCAGGGATTTATTGGCTGGCAAGAATGCTGGAAGGAGGGGAAGAGCCTCTCTACATTGCGCGCAGGCTCATTAGGTTTGCGAGTGAGGATGTTGGTTTGGCTGATCCCTCGGCTCTCAATCAGGCTGTTTCATGCTATCAGGCTTGCCACTTCCTGGGAATGCCAGAGTGCAATGTCATTCTTGCGCAGTGTGTTGCCTACTTGGCCTTGGCTCCTAAATCTGTCTCTGTTTACAAAGCAATAGGAGCTGCTCAAAAGGTGGTTAGGGAATCTGTTGGGCAGAATGAAGGGGTGCCTCTTCATCTCAGGAATGCGCCAACAAAACTAATGAAAGACATTGGGTATGGCAAGGGATACATATATCCTCCAGACAACCCTTTATCAACACAGACGTATTTGCCTCCCTCACTAGCAGGCTACAAGTTCCTTGATTGGCCTACCACCAACAAGAATGCTTCTGATGATGAAGCAAAGCCCTCCACATCTGGGACTGCCAGTATATAG 1680 0.5256 MEMQQLLSMGFPDELAAQALAATGGKSTVKATEWILSHKSNTSPSTQPKIERFFLSQSTSPEEGQAKAIEEEQQQEVEASPHSLSKRPRSVPSSNPQSSFFFTPLRPSKKHNHQPLYERLRPTTLDHVLGQDHLLSPNSLLPSAIHRNRLPSILLWGPPGTGKTTIARAIVNSFPHQQCPCYRFVSLSAVTSGVKDVRDAVDEARKLRVKSNQRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFVGATTENPSFHLITPLLSRCRLLTLNPLKPHHVSLLLRRAVDDSDKGLTHSAGCQVDVSQDVLDFIGSNCDGDARVALNALEIAAVTAAARLQQPANHSKEEQYKAAVTLDDAKEALQCKHLAYDKAGEEHYNLISALHKSMRGSDANAGIYWLARMLEGGEEPLYIARRLIRFASEDVGLADPSALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSVSVYKAIGAAQKVVRESVGQNEGVPLHLRNAPTKLMKDIGYGKGYIYPPDNPLSTQTYLPPSLAGYKFLDWPTTNKNASDDEAKPSTSGTASI 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241703g00050 559 FunFam AAA-type ATPase family protein 272 346 - -
Stsc241703g00050 559 Pfam ATPase family associated with various cellular activities (AAA) 153 265 IPR003959 GO:0005524|GO:0016887
Stsc241703g00050 559 PANTHER WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER 1 547 - -
Stsc241703g00050 559 CDD HLD_clamp_RarA 272 362 - -
Stsc241703g00050 559 Gene3D - 106 270 IPR027417 -
Stsc241703g00050 559 MobiDBLite consensus disorder prediction 78 105 - -
Stsc241703g00050 559 FunFam Replication-associated recombination protein A 108 271 - -
Stsc241703g00050 559 Pfam AAA C-terminal domain 299 387 IPR032423 -
Stsc241703g00050 559 Gene3D - 466 550 - -
Stsc241703g00050 559 Gene3D - 362 465 - -
Stsc241703g00050 559 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1 38 IPR015940 -
Stsc241703g00050 559 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 110 339 IPR027417 -
Stsc241703g00050 559 CDD AAA 143 266 - -
Stsc241703g00050 559 SUPERFAMILY post-AAA+ oligomerization domain-like 372 539 IPR008921 GO:0003677|GO:0006260
Stsc241703g00050 559 Gene3D - 272 346 - -
Stsc241703g00050 559 Gene3D - 2 40 - -
Stsc241703g00050 559 SMART AAA_5 149 272 IPR003593 GO:0016887
Stsc241703g00050 559 FunFam Putative AAA family ATPase 362 465 - -
Stsc241703g00050 559 SUPERFAMILY UBA-like 3 41 IPR009060 GO:0005515
Stsc241703g00050 559 MobiDBLite consensus disorder prediction 57 113 - -
Stsc241703g00050 559 SMART uba_6 1 37 IPR015940 -
Stsc241703g00050 559 Pfam UBA/TS-N domain 4 35 IPR015940 -
Stsc241703g00050 559 Pfam MgsA AAA+ ATPase C terminal 388 537 IPR021886 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241703g00050 Stsc-Chr241703 166261 167940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241703g00050 115 388 Core DNA Replication Machinery Family AT1G77470 24.643 4.02e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241703g00050 K07478 - gmx:100799257 804.283