Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241703g00046 ATGGCACATAATGGCAAGCAAAGTGACCCCCTTAGCTGGGGCCTAGCAGCGGATTCACTCAACGGCAGCCACTTTCATGAGGTCAAACGCATGGTGGCTGAGTACAGGAAGGCCGCCATCTGCATGGGAGCAGGGGAGCCGCTAACCATATCGCAGGTGGCTGCCGTTGCCAAGCGTGACTCTCAAGTCAAGGTGGAGATCTCTGAGTCAGCGAGAGCAGGCGTCGAGGCCAGCTGCCAGTGGATTATGGACAGTATTCAAAAAGGCATTACCATCTATGGTGTTACCACCGGCTTTGGAGCTTCCTCCAGCAGGAAAACCGATCAAGGACTTGCCCTTCAGAAAGAGATGGTTAGGTTTTTGAACTGTGCAATATTTGGCCATGAAAGTGAGTTATCCCATAGGCTGCCAAGATCAGCAACCAGAGCAGCCATGCTCGTGAGGGTCAACACACTTCTTCAGGGCTACTCTGGCATCAGATTTGAAATCTTGGAAGCAATCACCAAACTCCTCAACAACAATGTCACCCCCATATTGCCATTACGTGGTACCATTACTGCCTCGGGCGATCTCATTCCTCTCTCCTACATTGCTGCATTGCTAACCGGACGGCGAAACTCCAAAGCCGTCGGACCCGATGGAGAGTCCCTTGATGCAAAGGAAGCTTTCCATTTAGCAGGTCTTCATTCTGGGTTCTATGAGCTGAAACCAAAAGAAGGACTTGCCCTCGTAAATGGCACTGCCGTGGGGTCTGCTGTAGCTTCTGTGGTGCTCTTCGAGGCAAACATCTTAGCCTTGTTGTCTGAAATTCTGTCAGCAGTCTTCGCACAAGTTATGCAAGGGAATCCAGAATTTACACATCATTTGATACATAAACTCAAGTACCATCCTGGCCAAATTGAAGCTGCTGCTATCATGGAGCACATCTTAGAGGGAAACTCTTACATCAAACAAGCCAGAACACAAGAGCCAGATCCATTGCAAAAGCCTAAAAAAGATCGCTATGCTCTCCAAACTTCTCCTCAGTGGCTTGGTCCACAGATTGAAGTCATCAGGTATTCGACTAAATCAATTGAGAGGGAAATAAACTCTGTCAACGACAATCCGTTGATTGATGTCACTAGCAACAAGGCTTTGAATGGTGGCAATTTTCAAGGCACCCCAATTGGAGTTTCCATGGATAATGCACGCTTAGCTGTTGCTTCAATTGGCAAACTCATTTTTGCCCAATTTACCGAGCTAGTCAATGACTTGTATAACAACGGTTTGCCATCCAATCTCTCTGTTGGCAGAAATCTGAGTCTGGATTATGGTTTTAAGGCATCTGAAGTTGCCATGGCTGCTTATTGCTCTGAACTCCAATATCTGGCAAATCCAGTAACCAGCCACGTGCAAAGTGCTGAGCAGCATAACCAAGATGTGAATTCCTTGGGGTTAATTTCTGCTTGGAAAACCGTAGAAGCTGTCGAGATATTGAAGCTCATGTGTTCCACGTATTTGGTTGCACTTTGCCAAGCTATTGACTTGAGACATTTGGAGGAAATTTTCAAGAGCACAGTCAAGGATACTGTAAGCAGAGTTGCAAAGAAGATGTTGAGCACGGATTTGTTTGGCTCATGTGAGAGAGATTTGCTAAAAGTAGTTGATAGAGAATATGTATTCTCATATATTGATGATCCCTTCAATGTTAGGTACCCATTGTTGCCTAAATTGAAACAAATACTTTATGAGGAAGCACACGCCAGAGCCATCAGTGAGAAGAAGAATACAAGCGTGTTATTTTTCGAGGAAATTGGAGCTTTTGAGGATGAGTTGAAGAGTGTGTTACCAAAGGAGGTTGAGAGTGCAAGGGTGGCTTATGAGAATGGGAATCCAACAGTTCCAAATAGAATTGTGGAATGCAGATCATACCCATTGTATAAGTTTGTGAGGGAGGAGCTCGGAGTCGGGTTGCTCACCGGGGAGAAGACTGCCTCACCAGACCAGGAATTCGAGAAAGTATATACGGCAATTTGTCAAGGAAAGATTTTTGACTCCATTCTAGACTGCCTCAAACAATGGAACGGGGTTCCTATCTCAGTCTAA 2085 0.458 MAHNGKQSDPLSWGLAADSLNGSHFHEVKRMVAEYRKAAICMGAGEPLTISQVAAVAKRDSQVKVEISESARAGVEASCQWIMDSIQKGITIYGVTTGFGASSSRKTDQGLALQKEMVRFLNCAIFGHESELSHRLPRSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNNNVTPILPLRGTITASGDLIPLSYIAALLTGRRNSKAVGPDGESLDAKEAFHLAGLHSGFYELKPKEGLALVNGTAVGSAVASVVLFEANILALLSEILSAVFAQVMQGNPEFTHHLIHKLKYHPGQIEAAAIMEHILEGNSYIKQARTQEPDPLQKPKKDRYALQTSPQWLGPQIEVIRYSTKSIEREINSVNDNPLIDVTSNKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSVGRNLSLDYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISAWKTVEAVEILKLMCSTYLVALCQAIDLRHLEEIFKSTVKDTVSRVAKKMLSTDLFGSCERDLLKVVDREYVFSYIDDPFNVRYPLLPKLKQILYEEAHARAISEKKNTSVLFFEEIGAFEDELKSVLPKEVESARVAYENGNPTVPNRIVECRSYPLYKFVREELGVGLLTGEKTASPDQEFEKVYTAICQGKIFDSILDCLKQWNGVPISV 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241703g00046 694 NCBIfam phenylalanine ammonia-lyase 9 685 IPR005922 GO:0005737|GO:0006559|GO:0016841
Stsc241703g00046 694 CDD PAL-HAL 46 510 IPR001106 -
Stsc241703g00046 694 Gene3D - 513 629 IPR023144 -
Stsc241703g00046 694 PANTHER HISTIDINE AMMONIA-LYASE 6 693 IPR001106 -
Stsc241703g00046 694 Gene3D - 2 247 IPR024083 -
Stsc241703g00046 694 FunFam Phenylalanine ammonia-lyase 1 247 - -
Stsc241703g00046 694 SUPERFAMILY L-aspartase-like 9 692 IPR008948 GO:0003824
Stsc241703g00046 694 Pfam Aromatic amino acid lyase 48 513 IPR001106 -
Stsc241703g00046 694 Gene3D Fumarase/aspartase (Central domain) 248 689 - -
Stsc241703g00046 694 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 183 199 IPR022313 GO:0016841
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241703g00046 Stsc-Chr241703 154447 156657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241703g00046 9 694 Monolignol Biosynthesis Gene Families AT2G37040 70.563 0.0 1029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241703g00046 K10775 - gmx:100787872 1125.54