Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241703g00044 ATGGCGCAGTCCAAGGCACTTCCCTGCGACTCCGACGGTTCCTGCATGCTCTGCACCCACAAACCACCTGCGCACGAGTGCCTCTCCTGTCGCACATGCCACACCCCGTGGCATCAGCCTTGTCTCCCCGCTGGCGCCGGCCCTCCTACCATGGCCGATGTCACCACTTGGGAGTGCCCTGACTGTGCCGATCCTGCTCCCGTTCAAGCACCGGCTCCTGTCGTCTCCGGAAGCTCTGGCACCTTAGTGGCGGCGATCCGGGCGATTCAGGGAGACCCGTCACTGACGGACGAGGAGAAAGCGAAGAAAAGACAGGAGCTTGTTTCACGCTCCACGAAGGCAGTGTCCGGAGCGGAGAATGGGAAACCGGAGAAAGACATCTTTGATGGAAGCCTTAATTGCTCGATCTGCATGCAGTTGCCGGAAAGACCTGTCACGACGCCGTGTGGTCACAACTTCTGTTTGAAGTGCTTCCAAAAGTGGATTGGACAGGGAAAGCGGACTTGTGCCAACTGTCGTACTCAGATCCCACCTAAGATGGCCGAAAACCCTCGGATTAACGACCAATTGGCCATTGCCATCCGTTTGGCGAGGCAGATGAAGGCTACTGGCAAGGTGGGCTCGGTGGCGCAGCCCAAGGTGTATGTCAGCAGGAAAAATGATGAGCTTCCTGACACTTGCTTCACCACGGAGCGGGCCAAGAAGACTGGCAAAGCCAATGCTTGCAGTGGTAAGATCTTTGTGACCATCCCCTCTGATTTTTTGGGACCGATCACTGCTGAGTATGATCCGAGGAACAATCGAGGGGTTCTTGTTGGGGATACTTGGGAGGACAGAATGGATTGCAGGCAGTGGGGCGCTCATTTCCCTCACGTCGCTGGCATTGCTGGCCAGAAGGGTTTTGGTGCTCAGTCTGTTGCACTTTCAGGTGGCTATGTTGATGACGAGGATCACGGAGAGTGGTTCCTCTACACTGGAAGTGGCGGAAAAGATCTTAGTGGTAACAAACGCACCAACAAAACACATTCATTTGACCAGAAGTTTGACAACATGAATGAGGCTCTCCGAGTCAGTTGCAAAGAAGGTTATCCTGTTAGGGTTGTGAGGTCCCATAAGGAAAAACGATCTGCTTATGCACCCCAATTTGGAGTGAGGTACGATGGAGTTTATCGGATAGAGAAATGCTGGCGTAAGAAGGGGATACAAGGTTGCTTGGTTTGCAGATATTTGTTTGTTAGATGTGACAATGAGCCAGCACCATGGACAAGTGATGAACATGGAGATCGACCACGCCCACTTCCAGTGGTTAAAGAGTTGAAGGGGGCAATTGATGTAACTGAAAGGAAGAAAGATGCAGCATGGGATTATGATGAAGAAAAGGAATGCTGGTTGTGGAAGAGAGCCCCACCACCAAGTAAGAAAATGGATGCTGTAAGGTATGAACATATATCAGAAAAGATAAAAATTGTACGAAAAGTTAAGACCAAGCCAGTGAAAGATAGGCTTATGAAAGAGTTTGCTTGCCTCTTGTGTCGCAAGGTGTTGAATGTCCCTGTGACAACTCCTTGTGGCCACAACTTCTGCAAAGCCTGTTTGGAGGGTGCCTTTTCTGGCAAAAGCTTTATCAGAAAGAGGGGAAGTGAAGGTGGACGCTCCTTGCGAGCACAGAAGAATGTTATGAAATGCCCATCATGTTCAATTGACATAGCTGAATTTCTCCAGAATCCAGAGGTTAACAGACACATGATGAGTGCTATAGAAACACTGATGCATGAGGCTGAGATGGAGGAGTGTTCTGAAGGGTCTGATGACAAAAATGAAGAAAATCTAGAGACCGTGAATGATGATGATGGGACAGAAGTTTCAAAGCCTAGTGTTTCCAGTGAGAATGTCTTGGAAGAGATCAAGGACAATGATTTGAACCAGCCACAAAAGCGTAGAAAGGGTGCTGGTGGTTCAACTATTGTGAACACTGAGGAGGAAATCAATGGAGCAGGACTAGAGGACAATGTAAATACTTGCAGCACTTAA 2031 0.4958 MAQSKALPCDSDGSCMLCTHKPPAHECLSCRTCHTPWHQPCLPAGAGPPTMADVTTWECPDCADPAPVQAPAPVVSGSSGTLVAAIRAIQGDPSLTDEEKAKKRQELVSRSTKAVSGAENGKPEKDIFDGSLNCSICMQLPERPVTTPCGHNFCLKCFQKWIGQGKRTCANCRTQIPPKMAENPRINDQLAIAIRLARQMKATGKVGSVAQPKVYVSRKNDELPDTCFTTERAKKTGKANACSGKIFVTIPSDFLGPITAEYDPRNNRGVLVGDTWEDRMDCRQWGAHFPHVAGIAGQKGFGAQSVALSGGYVDDEDHGEWFLYTGSGGKDLSGNKRTNKTHSFDQKFDNMNEALRVSCKEGYPVRVVRSHKEKRSAYAPQFGVRYDGVYRIEKCWRKKGIQGCLVCRYLFVRCDNEPAPWTSDEHGDRPRPLPVVKELKGAIDVTERKKDAAWDYDEEKECWLWKRAPPPSKKMDAVRYEHISEKIKIVRKVKTKPVKDRLMKEFACLLCRKVLNVPVTTPCGHNFCKACLEGAFSGKSFIRKRGSEGGRSLRAQKNVMKCPSCSIDIAEFLQNPEVNRHMMSAIETLMHEAEMEECSEGSDDKNEENLETVNDDDGTEVSKPSVSSENVLEEIKDNDLNQPQKRRKGAGGSTIVNTEEEINGAGLEDNVNTCST 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241703g00044 676 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 199 IPR013083 -
Stsc241703g00044 676 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 470 597 IPR013083 -
Stsc241703g00044 676 Pfam RING-type zinc-finger 508 563 IPR027370 -
Stsc241703g00044 676 CDD RING-HC_ORTHRUS_rpt1 131 177 IPR047498 -
Stsc241703g00044 676 SUPERFAMILY FYVE/PHD zinc finger 7 65 IPR011011 -
Stsc241703g00044 676 MobiDBLite consensus disorder prediction 599 615 - -
Stsc241703g00044 676 SUPERFAMILY PUA domain-like 239 433 IPR015947 -
Stsc241703g00044 676 SUPERFAMILY RING/U-box 500 592 - -
Stsc241703g00044 676 MobiDBLite consensus disorder prediction 630 644 - -
Stsc241703g00044 676 FunFam Predicted protein 98 199 - -
Stsc241703g00044 676 Pfam Zinc finger, C3HC4 type (RING finger) 134 172 IPR018957 GO:0046872
Stsc241703g00044 676 Gene3D - 236 435 IPR036987 -
Stsc241703g00044 676 Pfam SAD/SRA domain 267 416 IPR003105 -
Stsc241703g00044 676 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 3 601 IPR045134 -
Stsc241703g00044 676 MobiDBLite consensus disorder prediction 594 676 - -
Stsc241703g00044 676 ProSiteProfiles Zinc finger RING-type profile. 134 173 IPR001841 -
Stsc241703g00044 676 SMART G9a_1 260 417 IPR003105 -
Stsc241703g00044 676 SMART ring_2 508 565 IPR001841 -
Stsc241703g00044 676 SMART ring_2 134 172 IPR001841 -
Stsc241703g00044 676 ProSiteProfiles Zinc finger RING-type profile. 508 566 IPR001841 -
Stsc241703g00044 676 SUPERFAMILY RING/U-box 128 181 - -
Stsc241703g00044 676 ProSitePatterns Zinc finger PHD-type signature. 15 62 IPR019786 -
Stsc241703g00044 676 ProSiteProfiles YDG domain profile. 265 413 IPR003105 -
Stsc241703g00044 676 ProSitePatterns Zinc finger RING-type signature. 523 532 IPR017907 -
Stsc241703g00044 676 MobiDBLite consensus disorder prediction 94 109 - -
Stsc241703g00044 676 MobiDBLite consensus disorder prediction 94 124 - -
Stsc241703g00044 676 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 236 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241703g00044 Stsc-Chr241703 139201 143172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241703g00044 1 599 C2H2 Transcription Factor Family AT5G39550 59.539 0.0 699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241703g00044 K10638 - gmx:100781044 900.968