Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241703g00028 ATGGCGGACGGTGAGGAAGTAGTAGTATCTGATGAAGAAGCGTTCTTGTTTGCCATGGAACTAGCGGGTGCCTCAGCGGTTCCCATGGTGCTGAGATCAGCGTTGGAGCTTGGTATCATAGACACCATAGCTAAAGCTGGCCCCGGAGCATGCCTTTCAGTTCATGGAATACTTTCTCAGCTCCCAACAACAATAAACAACCCTCATGCACCCGCCTTGCTTGACCGCATGTTGAAGCTCCTCGCAAGCTTCAACATCCTCACTTGCAGGCTCCGTGGTGACAGTGATGAGAGGCAGTACGGCCTGTCCCCTTTGGCGAAGTACTTTGTGAACAACCATGATGGCTTCTCTCTGGTTCCTTCTTTTCTCATGCAACATGACAAAGTCCTTAAGGACATGTGGTATCATTTGACAGATTCGGTAAGGGAGGGTGGGCTTCCATTCGACAATGCTTACGGAATGACTTCCTTTGAGTTCCACAGCGTGAATCCGAGATTCAACGAGGTTTTTAACAAGGGCATGTCCAATCACTCCACCATCATAATGCACAAGATTCTTGAGAATTACAATGGCTTTGAGGGTCTCCAATCTCTTGTTGACGTTGGTGGTGGCACCGGGGCTGTTATTAACATGATTCACTCCAAATATCCCAACATGAGGGCTATTAATTTTGACTTACCCCATGTCATTAAGGAAGCTCCCGAATATGAAGGCGTCCTCCATGTTGGTGGAGACATGTTTCTTAGTGTTCCAAAAGCAGATGCTATTTTCATGAAGTGGATATGTCACGACTGGAACGACGAGCAATGTGTGAAGCTTCTCAGGAATTGCTATGAATCGCTTCCTGAGAAAGGGAAGGTGATATTGGCTGAATGCATGATTCCAGTGGCTCCGGAGGGTAGTGCGGCGGCCAAGACGGTGTTTCAGACGGATGTGATAATGTTGTGTCATAGCTCAGGTGGAAGAGAGAGGACTCAAAAAGAGTATGAAGCTTTGGCGAAGGGTGCTGGATTCCATGGTTTCAGAGTTGCTTGCTCTGCTTTCAACATGCATGTCATGGAATTCCTTAAGAACCCTTCAAAATTAAAATAA 1092 0.4698 MADGEEVVVSDEEAFLFAMELAGASAVPMVLRSALELGIIDTIAKAGPGACLSVHGILSQLPTTINNPHAPALLDRMLKLLASFNILTCRLRGDSDERQYGLSPLAKYFVNNHDGFSLVPSFLMQHDKVLKDMWYHLTDSVREGGLPFDNAYGMTSFEFHSVNPRFNEVFNKGMSNHSTIIMHKILENYNGFEGLQSLVDVGGGTGAVINMIHSKYPNMRAINFDLPHVIKEAPEYEGVLHVGGDMFLSVPKADAIFMKWICHDWNDEQCVKLLRNCYESLPEKGKVILAECMIPVAPEGSAAAKTVFQTDVIMLCHSSGGRERTQKEYEALAKGAGFHGFRVACSAFNMHVMEFLKNPSKLK 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241703g00028 363 Pfam Dimerisation domain 29 82 IPR012967 GO:0046983
Stsc241703g00028 363 Pfam O-methyltransferase domain 134 338 IPR001077 GO:0008171
Stsc241703g00028 363 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 114 354 IPR029063 -
Stsc241703g00028 363 PANTHER O-METHYLTRANSFERASE 19 341 IPR016461 GO:0008168
Stsc241703g00028 363 Gene3D Vaccinia Virus protein VP39 110 357 IPR029063 -
Stsc241703g00028 363 PIRSF O-mtase 3 357 IPR016461 GO:0008168
Stsc241703g00028 363 Gene3D - 3 109 IPR036388 -
Stsc241703g00028 363 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 19 357 IPR016461 GO:0008168
Stsc241703g00028 363 FunFam Caffeic acid 3-O-methyltransferase 2 109 - -
Stsc241703g00028 363 FunFam Caffeic acid O-methyltransferase 110 357 - -
Stsc241703g00028 363 SUPERFAMILY "Winged helix" DNA-binding domain 11 112 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241703g00028 Stsc-Chr241703 96913 98376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241703g00028 7 358 Monolignol Biosynthesis Gene Families AT5G54160 60.000 4.11e-162 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241703g00028 K13066 - qsa:O6P43_020016 480.33