Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241703g00002 ATGGTTTCCTCAGAAGAAACTGCAGATCACAATGTTACTTATGCTATGCCGCTGCAGAAAGTAAGTCCCCATAGTGATATTACAGAATCACAAGGGATTCATGAAGCTGAAATGCCTTCATCCAAACCAAGGGAAGAAACAAGCATTCCTTCTGCTGTGGCTCAAAACAAAGTGAAGGATTCTGATGCTGCTGCTTCTGTGTTGCAATCAGATCGAGAAGGAAGTACACGTGTTGCAGCATCAGTTGAAAAACTTTTGCAGATCGCCGATACCCCTTTCCGTGAACCACGTCATCCATCACAATCTGGTCATGACAGTCCGTCGATAATACGTGAAAGGGTATCAAAAGATGGGTATAACTGGCGAAAATATGGCCAGAAAAATGTTAAAGGGAATGAGTTTATAAGGAGCTATTACAAGTGTACACATCCGAACTGCCAGGCAAAGAAACAGTTAGAGCAGTCAAATGATGGCCAGATTACAGATTCAATTTGCATTGGTCAGCATAATCATCCTAGGCCTCATTCGAACATCACAAAGGCCATTGTTCCTGTTGTTGAAGAAGGACCAGACAAGCCCTGTGTTGCCAATGTGGAAGGTGAAGGCAAAGCATTGAATGAGCATGGAAGTGTACCTCAACGGATGAAGTCTTCACACCCCCTTCAGATTACAAATGCTCCTTCTGCTGATTTGATGAAAGCTGCACATTCACAACTGACCACAGCAGATGACGCGGTCCACAACAATGACTATCCTGATTCAAAGCGGCAGAAGATAGACAATAGTAATACTGAAGTCATTGTAGCTGACAAGTCAATTTGTGTGTCTCGTGTTGTCGTTCAAACATCGAGTGAGGTTGATTTTGTAAATGATGGGTACCGTTGGCGCAAATATGGTCAGAAACTAGTTAAAGGAAATGCAAATCCCAGAAGTTATTATCGGTGCTCTGCTCCTGGATGCTTTGTCAAAAAGCATGTGGAAAGGGCCTCTCATGATTCAAAAGTTGTAATAACTACCTATGAGGGACAACATGTTCATGAAATCCCACCTGGAAGGACTGTTAGTCAAAATGCAGCTACAAATGCTCAAACGACGACCATTAATGGCAAGCCAGGATCTGTAGCAAATCCTGTTTCTATAGATACAAGGGGAAGCAGGTCAACTGAGCAAGTAAATGGAAACTCAATTACTAAATCAGAGGCTGGAAAGAGCCCTGAAAGCAAATCAAATGGGCAACAACAACAAGAAAATGAAAATGCAGTTGCCAAAGAGGACTCTGTTGGTGCTAACATCACATGCCAATCGTATTCTGAAGACCCATGTCGATCGAAATCAAATGAACAGCCGAAAGATGAGGTAGAAACTAAATCAGAAGGAAAGAAGGAATCCCCTAATGTGGTTGCTGTTAATGATGCTCCTGGTCAAGAAGGTCAACTCAAGAAGCAATCATCATCAGATGCAGAAGCTGTCCAAAGCTAA 1479 0.426 MVSSEETADHNVTYAMPLQKVSPHSDITESQGIHEAEMPSSKPREETSIPSAVAQNKVKDSDAAASVLQSDREGSTRVAASVEKLLQIADTPFREPRHPSQSGHDSPSIIRERVSKDGYNWRKYGQKNVKGNEFIRSYYKCTHPNCQAKKQLEQSNDGQITDSICIGQHNHPRPHSNITKAIVPVVEEGPDKPCVANVEGEGKALNEHGSVPQRMKSSHPLQITNAPSADLMKAAHSQLTTADDAVHNNDYPDSKRQKIDNSNTEVIVADKSICVSRVVVQTSSEVDFVNDGYRWRKYGQKLVKGNANPRSYYRCSAPGCFVKKHVERASHDSKVVITTYEGQHVHEIPPGRTVSQNAATNAQTTTINGKPGSVANPVSIDTRGSRSTEQVNGNSITKSEAGKSPESKSNGQQQQENENAVAKEDSVGANITCQSYSEDPCRSKSNEQPKDEVETKSEGKKESPNVVAVNDAPGQEGQLKKQSSSDAEAVQS 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241703g00002 492 SUPERFAMILY WRKY DNA-binding domain 281 349 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc241703g00002 492 Pfam WRKY DNA -binding domain 116 172 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc241703g00002 492 Pfam WRKY DNA -binding domain 290 346 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc241703g00002 492 Gene3D WRKY domain 276 342 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc241703g00002 492 MobiDBLite consensus disorder prediction 476 492 - -
Stsc241703g00002 492 MobiDBLite consensus disorder prediction 443 461 - -
Stsc241703g00002 492 MobiDBLite consensus disorder prediction 428 442 - -
Stsc241703g00002 492 FunFam WRKY transcription factor 57 275 349 - -
Stsc241703g00002 492 FunFam WRKY transcription factor 104 175 - -
Stsc241703g00002 492 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 57 363 IPR044810 GO:0003700
Stsc241703g00002 492 SUPERFAMILY WRKY DNA-binding domain 111 174 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc241703g00002 492 Gene3D WRKY domain 108 175 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc241703g00002 492 MobiDBLite consensus disorder prediction 1 75 - -
Stsc241703g00002 492 MobiDBLite consensus disorder prediction 364 421 - -
Stsc241703g00002 492 ProSiteProfiles WRKY domain profile. 110 174 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc241703g00002 492 MobiDBLite consensus disorder prediction 364 492 - -
Stsc241703g00002 492 MobiDBLite consensus disorder prediction 90 110 - -
Stsc241703g00002 492 SMART WRKY_cls 289 348 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc241703g00002 492 SMART WRKY_cls 115 173 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc241703g00002 492 ProSiteProfiles WRKY domain profile. 284 349 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241703g00002 Stsc-Chr241703 3642 7402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241703g00002 101 363 WRKY Transcription Factor Family AT2G04880 48.897 7.73e-80 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc241703g00002 WRKY 8e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241703g00002 K18834 - gmx:100781219 507.294