Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241703g00001 ATGCAGGCATCAGAGCATCATAGAAGTCCAAGTATGTACTATCAACCAATGCAGCAGGTTGAGGCATACTGCTTGCCACAATATCAAGCTCTCAATCATCATCAGTACTACAATGATGCAGGCCATGGTACTGGAAGCAGATTCTCTAATCAAAGTTCTTCTGAAATTTACTGCACATTGGAGTCATCATCTGCAACTGGCAGTTTCAATGTTTACAATTCTCCTTCAACTGTTAGTTTCTCACCAAACGGTAGCCCAATTTCGCATCAAGATTCTCAGTCTCATTCGTATCCACCTGACAATAACTATGAATCTCCTATGAGTGGTTCGTGCATAACCGACGATTTAAGTACCTTCAAGCACAAGCTGAGAGAGTTGGAGAGTGTGATGCTGGGTCCTGACTGTGATAATCTTGATAGCTATGACAGTGCATTCAATGATGCAACCGACTTCATGTCATCCGAGATGGACAGCTGGAGACAAACAATGGTGGCAATTTCTAGTAAGAACTTAAAGCATGTCCTCGTTGTGTGTGCCAAAGCGATTGCAGACAATGATTTGCTAATGGCACAATGTCTGATGGATGAATTGAGGCAGATGGTGTCTGTCTCTGGCGAACCGATTCAAAGGCTTGGAGCATACATGTTGGAAGGCCTGGTTGCACGGTTGTCTTCTTCTGGGAGTTCAATCTACAAAGCCTTGAGATGCAAGGAACCAGAAAGTTCTGAGCTCCTCTCCTATATGCACATACTCTATGAGGTTTGTCCCTACTTCAAATTTGNNNNNNNNNNTGCAGAAGCTATGAAAGACGAAAATAGAGTTCACATAATTGATTTTCAAATTTCTCAAGGGAGCCAGTGGATCACTTTGATTCAAGCTTTTGCAGCTAGGCCTGGAGGACCACCCCACATCCGAATTACTGGTATAGATGATTCAACATCGGCTTATGCGCGCGGTGGTGGGCTGCATATTGTGGGGAAGAGGTTGTCCAAGCTTGCAGAGCATTTTAAGGTGCCATTTGAATTTCATGCTGCAGCTATATCTGGTTGTGATGTTCNNNNNNNNNNGACCGGGCGAGGCATTAGCTGTGAATTTTGCATTCATGCTACATCACATGCCAGATGA 1125 0.4329 MQASEHHRSPSMYYQPMQQVEAYCLPQYQALNHHQYYNDAGHGTGSRFSNQSSSEIYCTLESSSATGSFNVYNSPSTVSFSPNGSPISHQDSQSHSYPPDNNYESPMSGSCITDDLSTFKHKLRELESVMLGPDCDNLDSYDSAFNDATDFMSSEMDSWRQTMVAISSKNLKHVLVVCAKAIADNDLLMAQCLMDELRQMVSVSGEPIQRLGAYMLEGLVARLSSSGSSIYKALRCKEPESSELLSYMHILYEVCPYFKFXXXXAEAMKDENRVHIIDFQISQGSQWITLIQAFAARPGGPPHIRITGIDDSTSAYARGGGLHIVGKRLSKLAEHFKVPFEFHAAAISGCDVXXXXTGRGISCEFCIHATSHAR 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241703g00001 374 MobiDBLite consensus disorder prediction 80 109 - -
Stsc241703g00001 374 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 136 347 IPR005202 -
Stsc241703g00001 374 ProSiteProfiles GRAS family profile. 162 374 IPR005202 -
Stsc241703g00001 374 Pfam GRAS domain family 171 345 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241703g00001 Stsc-Chr241703 625 3549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241703g00001 12 343 GRAS Transcription Factor Family AT5G48150 54.519 2.80e-116 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc241703g00001 GRAS 2.6e-54 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241703g00001 - - gmx:100808300 572.392