Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241701g00016 ATGAGGACCAAAGTCCCGCTCTGTTCCATTTGCCAAACGCGGTACAATGAAGACGATCGAGTCCCTCTCCTTCTCCAATGCGGCCACTGTTTCTGCAAACACTGCCTCTCTAGAATGTTCTCGGCGTCGCCAGACACCACGCTGACGTGTCCCCGCTGCCGCCACGTGTCACCCGTCGGGAACTCCGTCCAAGCCCTCTCCAAGAACTACTCCGTCCTCCCTCTCCTCGATTCAACTTCGTCCAATACCGAAGATTTCAACTATTCCACCGACGAAGACAGCGAAATCGAAGACGATGAGGACCGATCAAAGTTACTGCGGCGGCAGCGGCGGGGGAGCGAAGAGTGCGGGCCGGTGATTGAGGTTGGAGCGCATCCGGAGATGAGGTTGGTGAAGAGGATTGGAGGAGGAGGGGAAGGGGGCGGTGGCGTGGAGACGTGGAGGGCGGTGATTGGGGGCGGGGGATGGCGGTGTCGGCACAGCGTGGTGGTGAAGGAAGTGGCGGAGGAGGGGGCGGAGATGATGGAGTTGGTGGAAAGGGTGCGGCGAGGGTCGATGTGGTGCAGGAACGTGTGCAAGGTTTATGGAGTGAAGAAGTGGGAAGGGAGGTTGTGGATTGTGATGGAGAGGTGCTATGGCGGGTCGATTCAGTCCGCAATGAACCGCAACGGCGGCAGGCTTACTTTGGAACAAGTCCTCAGATATGGGGCAGACATTGCACGAGGGGTTTCTGAGCTTCATGTTGTAGGCATTGCTTGCATGAATATCAAACCTTCGAATCTTCTCCTCGATTCAAATGGCAGTGCAGTGGTTTCTGACTATGGAATTTCTACAATTCTGAAGAAACCTTTTTGTTGGAAAGCCCAACCAAATTGTGACTCTTCAAATATCCACTTGTGTATGAAGTGTACAGTGTTGAACCCACATTATGCAGCTCCAGAGGCTTGGGGGCAACCTGCAAAGAAGTCATTAAATTTGTTATGGGATGAAGATATTGGTATCTCTGCAGCATCAGATTCCTGGAGCTTTGGTTGTACCTTGGTGGAGATGTGCACAGGTTTCCTTCCTTGGGCTGGTTTAAACACAGATGAAATTTGTCAAGCAGTTGTAAAATCAAAGCAACAACCTCCACAATATGCTAGTGTGGTTGGTGGTGGAATACCTAGTGAATTGTGGAAAATGATTGGGGAATGCTTATTGTTCAAGCCATCTAAAAGGCCCAATTTTAATGCATTGTTAGCAATATTTCTTCGTAGTTTGCAAGAAATATCACACAATCTTGTTGCAAGCCCCAATAATAAAATTATTAAAGGTGTTGCATCAACTAGAATGGAGATGTCTACCGTGGTTGAATTAAAAGCTTCAAAACAAAACCTAATCGATCTTCATCGGTTTGTATCTGAAGGAGATGTCCGAGGTGCTAGAGATCTTCTTGCAAAGGCTGCTTCAGAACAAGGCAGTAACTATATATCTTCTCTATTGGAAACTCAAAATGCTGAGGGACAAACTGCTCTCCACCTGGCTTGTAGACGTGGTAGTGAAGAACTCGTCAGGGTAATCTTGGAGTTTGAAGAGGCTAATGTTGATGTCTTGGACAAAGATGGAGATCCTCCAATTGTTTATGCATTGGCTACTATATCCCTTGAGTGTATTCGTATTCTTCTCAAAAGAAATGCTAATGTGAAGTCAAGAATCACAAATGGCTATGGCATTGGCCTATCACTTGCTCACATTGTTTGTGCATCTCATGGCCAACCAGATTGTATGCGAGAACTATTATTAGCTGGAGCTGATCCTAATGCAGTTGATGATGAACGTGAATCTGTGCTGCATAGAGCAGTTTCAAAGAAGTACACAGACTGTGCTATTGTGATATTGGAGAATGGGGGTTGCAGATCAATGGCCATTTTAAATTCAAAGAATCTGACACCATTGCACCTGTGTGTGCTAACATGGAATGTTGCTGTGGTGAAAAGATGGGTGGAAATTGCAACTTCTGATGAGATTGGTGAATCAATTAACATCCAAGGTTCTGCAGGCACTGCATTGTGCATGGCTGCTATCACTAAGAAAGATCATAAAGGGGATGGTAGAGAGCTGGTACGGATATTGCTTGCTGCCGGAGCAGATCCATATGTTCAAGATCCACATAATGCACAGACAGCTTTGCATACAGCTGCCATGAATGATAATGTTGAATTGGTAAAGGTTATTCTTGATGCTGGTGTTGATGTAAATATTCGCAATGCTCACAATAGTATACCTCTTCATCTAGCCTTAGCCAGGGGTGCTAATTCATGTGTTGGAGCGCTTTTATCAGCTGGTGCAGATTGTAATTTACAGGATAATGAAGGTGACAATTCTCTCCATATAGCAGCAGAGACAGCAAGAATGATACGCGAGAATCTTGACTGGCTTATTGTAATGTTAGGGAATCCTAACGTTGATGTTGAAGTCAGAAACTACAGGCAAGTTGCAGCGTAG 2484 0.4618 MRTKVPLCSICQTRYNEDDRVPLLLQCGHCFCKHCLSRMFSASPDTTLTCPRCRHVSPVGNSVQALSKNYSVLPLLDSTSSNTEDFNYSTDEDSEIEDDEDRSKLLRRQRRGSEECGPVIEVGAHPEMRLVKRIGGGGEGGGGVETWRAVIGGGGWRCRHSVVVKEVAEEGAEMMELVERVRRGSMWCRNVCKVYGVKKWEGRLWIVMERCYGGSIQSAMNRNGGRLTLEQVLRYGADIARGVSELHVVGIACMNIKPSNLLLDSNGSAVVSDYGISTILKKPFCWKAQPNCDSSNIHLCMKCTVLNPHYAAPEAWGQPAKKSLNLLWDEDIGISAASDSWSFGCTLVEMCTGFLPWAGLNTDEICQAVVKSKQQPPQYASVVGGGIPSELWKMIGECLLFKPSKRPNFNALLAIFLRSLQEISHNLVASPNNKIIKGVASTRMEMSTVVELKASKQNLIDLHRFVSEGDVRGARDLLAKAASEQGSNYISSLLETQNAEGQTALHLACRRGSEELVRVILEFEEANVDVLDKDGDPPIVYALATISLECIRILLKRNANVKSRITNGYGIGLSLAHIVCASHGQPDCMRELLLAGADPNAVDDERESVLHRAVSKKYTDCAIVILENGGCRSMAILNSKNLTPLHLCVLTWNVAVVKRWVEIATSDEIGESINIQGSAGTALCMAAITKKDHKGDGRELVRILLAAGADPYVQDPHNAQTALHTAAMNDNVELVKVILDAGVDVNIRNAHNSIPLHLALARGANSCVGALLSAGADCNLQDNEGDNSLHIAAETARMIRENLDWLIVMLGNPNVDVEVRNYRQVAA 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241701g00016 827 ProSitePatterns Zinc finger RING-type signature. 27 36 IPR017907 -
Stsc241701g00016 827 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 88 IPR013083 -
Stsc241701g00016 827 SUPERFAMILY Ankyrin repeat 462 795 IPR036770 -
Stsc241701g00016 827 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG 4 823 IPR044584 GO:0004842|GO:0006952|GO:0009738|GO:0016567
Stsc241701g00016 827 Gene3D - 572 632 IPR036770 -
Stsc241701g00016 827 SMART ANK_2a 605 636 IPR002110 GO:0005515
Stsc241701g00016 827 SMART ANK_2a 640 669 IPR002110 GO:0005515
Stsc241701g00016 827 SMART ANK_2a 500 530 IPR002110 GO:0005515
Stsc241701g00016 827 SMART ANK_2a 678 713 IPR002110 GO:0005515
Stsc241701g00016 827 SMART ANK_2a 751 780 IPR002110 GO:0005515
Stsc241701g00016 827 SMART ANK_2a 784 819 IPR002110 GO:0005515
Stsc241701g00016 827 SMART ANK_2a 718 747 IPR002110 GO:0005515
Stsc241701g00016 827 SMART ANK_2a 571 601 IPR002110 GO:0005515
Stsc241701g00016 827 SMART ANK_2a 534 563 IPR002110 GO:0005515
Stsc241701g00016 827 Pfam Ring finger domain 8 54 IPR001841 -
Stsc241701g00016 827 PRINTS Ankyrin repeat signature 501 516 IPR002110 GO:0005515
Stsc241701g00016 827 PRINTS Ankyrin repeat signature 734 748 IPR002110 GO:0005515
Stsc241701g00016 827 SUPERFAMILY Protein kinase-like (PK-like) 161 419 IPR011009 -
Stsc241701g00016 827 MobiDBLite consensus disorder prediction 83 102 - -
Stsc241701g00016 827 CDD STKc_PknB_like 150 419 - -
Stsc241701g00016 827 ProSiteProfiles Protein kinase domain profile. 128 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241701g00016 827 SUPERFAMILY RING/U-box 7 59 - -
Stsc241701g00016 827 Gene3D - 454 571 IPR036770 -
Stsc241701g00016 827 Gene3D - 758 803 IPR036770 -
Stsc241701g00016 827 ProSiteProfiles Ankyrin repeat region circular profile. 718 749 - -
Stsc241701g00016 827 SMART ring_2 8 53 IPR001841 -
Stsc241701g00016 827 ProSiteProfiles Zinc finger RING-type profile. 8 54 IPR001841 -
Stsc241701g00016 827 ProSiteProfiles Ankyrin repeat profile. 500 522 IPR002110 GO:0005515
Stsc241701g00016 827 Pfam Ankyrin repeats (3 copies) 697 782 IPR002110 GO:0005515
Stsc241701g00016 827 Pfam Ankyrin repeats (3 copies) 579 657 IPR002110 GO:0005515
Stsc241701g00016 827 Pfam Ankyrin repeats (3 copies) 480 563 IPR002110 GO:0005515
Stsc241701g00016 827 Pfam Protein kinase domain 162 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241701g00016 827 ProSiteProfiles Ankyrin repeat region circular profile. 500 522 - -
Stsc241701g00016 827 Gene3D - 633 757 IPR036770 -
Stsc241701g00016 827 Gene3D Transferase(Phosphotransferase) domain 1 131 453 - -
Stsc241701g00016 827 ProSiteProfiles Ankyrin repeat profile. 718 750 IPR002110 GO:0005515
Stsc241701g00016 827 CDD RING-HC_KEG-like 5 61 - -
Stsc241701g00016 827 ProSiteProfiles Ankyrin repeat profile. 751 783 IPR002110 GO:0005515
Stsc241701g00016 827 ProSiteProfiles Ankyrin repeat region circular profile. 751 783 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241701g00016 Stsc-Chr241701 107677 115540 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241701g00016 124 413 CBL-interacting serine-threonine protein kinases AT4G18700 24.407 1.15e-16 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Stsc241701g00016 Pkinase 6.9e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241701g00016 K16279 - gmx:100777576 1114.75