Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241700g00038 ATGGAGAGTCACAGAATAATAGGAGGAGGAGGACTTGGTTTATCTGAGGCAGGGCCTTCAGCTACTCATCACCAGCATCACCATCATGTCCCTACTTATGGTGTTCTTCATGGAATTAATACTACTAATCCATCAACTTTAATTAATGAAGGACATGCTTTTAACTTTGGAGAGTTGGAAGAGGCCATAGTTCTGCAAGGAGTAAAGGGTAGAAATGATGAAGGCAAAGCACCTTTATTCACAACTGCAGCAGCACCACCCAGACCTGCTGCTACACTAGACATGTTCCCTTCATGGCCAATCAGATTTCACCAAACCTCAAGGGGAGGATCAAAATCAGGAGGGGAAAGCACTGATTCAGCACTTTCAACAAAAACTGAGCCACCCTTTGAAGCAGAATCTCCAATGAGTAAAAAGGCAACAACACCTTCTTCTTTAGATCATCATGATGCCTCAAGAATAATAGGCCCTTCTTCATCATCACAAGCCAAATCACCTCATGAAAAGAGGAAGGGAGCTGGTTCCACATCAGAGAAACCACTTGATGCAAAGACATTGAGAAGATTAGCTCAAAACAGAGAGGCTGCAAGAAAAAGCCGTCTAAGGAAAAAGGCTTATGTGCAGCAATTAGAGTCAAGTAGATTAAAGCTCACACAACTTGAACAAGACCTTCAAAGGGCTCGTTCTCAGGGACTATTCATGGATTGTGGTGGTGTTGGAGGCAATCTAAGCTCTGGAGCTGCGATGTTTGACATGGAATATGCAAGGTGGTTGGAGGAGGAGCAGCGGGTGATGGGGGAGCTGAGGAACGGGCTTCAGGCGCCGCTTTCAGACGGTGAAATGAGAGGGATAGTGGATGGATATTTGTCTCATTACGATGAACTCTTCAGGCTCAAGGCTGTTGCAGCAAAATCAGATGTATTCCATCTCATCAATGGCATGTGGACCTCCCAAGCCGAACGCTGCTTCCTCTGGATCGGCGGTTTCCGCCCCTCCGACCTCATCACGATGTTGATACAACAGTTGGAGCCACTAGCGGAGCAACAGATAATGGGAATGTATGGGCTGCGACATTCCTCACAGCAAGCGGAGGATGCTCTCTCTCAAGGCCTTGACCAGCTCCAGCAGTCTCTCGTCGACACCATCGCCGGCGGCCCCATCGTCGACGGTGTCCAACAGATGGTGGTTGCCATGGGCAAGCTTGCCAATCTTGAAGGCTTTGTTCGCCAGGCTGATAATTTGAGACAGCAAACACTTCACCAATTATGTCGATTACTAACAGTTCGTCAAGCAGCGCGCTGTTTTATTGTCATTGGAGAGTACTATGGACGCCTTCGTGCCCTTAGTTCTCTTTGGGCATCTAGACCAAGAGAAACGTTGATGAGCGATGATAACAACTCATGCCAAACAACCACTGACTTGCAAATGGTGCAACCTTCTCATCATCACCATCATCACAATCATCATCATTTTCCCAGTTTCTGA 1485 0.4707 MESHRIIGGGGLGLSEAGPSATHHQHHHHVPTYGVLHGINTTNPSTLINEGHAFNFGELEEAIVLQGVKGRNDEGKAPLFTTAAAPPRPAATLDMFPSWPIRFHQTSRGGSKSGGESTDSALSTKTEPPFEAESPMSKKATTPSSLDHHDASRIIGPSSSSQAKSPHEKRKGAGSTSEKPLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQDLQRARSQGLFMDCGGVGGNLSSGAAMFDMEYARWLEEEQRVMGELRNGLQAPLSDGEMRGIVDGYLSHYDELFRLKAVAAKSDVFHLINGMWTSQAERCFLWIGGFRPSDLITMLIQQLEPLAEQQIMGMYGLRHSSQQAEDALSQGLDQLQQSLVDTIAGGPIVDGVQQMVVAMGKLANLEGFVRQADNLRQQTLHQLCRLLTVRQAARCFIVIGEYYGRLRALSSLWASRPRETLMSDDNNSCQTTTDLQMVQPSHHHHHHNHHHFPSF 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241700g00038 494 MobiDBLite consensus disorder prediction 104 127 - -
Stsc241700g00038 494 FunFam BZIP family transcription factor 183 232 - -
Stsc241700g00038 494 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 182 226 IPR004827 GO:0003700|GO:0006355
Stsc241700g00038 494 PANTHER TRANSCRIPTION FACTOR TGA9 133 458 - -
Stsc241700g00038 494 Pfam bZIP transcription factor 183 225 IPR004827 GO:0003700|GO:0006355
Stsc241700g00038 494 Coils Coil 203 230 - -
Stsc241700g00038 494 Gene3D - 183 232 - -
Stsc241700g00038 494 SUPERFAMILY Leucine zipper domain 184 227 IPR046347 GO:0003700|GO:0006355
Stsc241700g00038 494 Pfam Seed dormancy control 265 339 IPR025422 GO:0006351|GO:0043565
Stsc241700g00038 494 SMART brlzneu 180 245 IPR004827 GO:0003700|GO:0006355
Stsc241700g00038 494 MobiDBLite consensus disorder prediction 1 28 - -
Stsc241700g00038 494 MobiDBLite consensus disorder prediction 164 186 - -
Stsc241700g00038 494 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 187 202 IPR004827 GO:0003700|GO:0006355
Stsc241700g00038 494 MobiDBLite consensus disorder prediction 102 186 - -
Stsc241700g00038 494 CDD bZIP_HBP1b-like 184 234 - -
Stsc241700g00038 494 ProSiteProfiles DOG1 domain profile. 247 455 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241700g00038 Stsc-Chr241700 168886 175547 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241700g00038 152 483 bZIP Transcription Factor Family AT1G08320 72.072 1.85e-174 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc241700g00038 DOG1 6.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241700g00038 K14431 - gmx:100775461 734.947