Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241700g00032 ATGGGTTTGAGGGAAAACTACTCTAATGTACAAGACAAGAATTTATACTACTGTCACAGCAGCAATAATAACCCAAGTTTCATTGAGTGGCTCAAACCATCTTCATCTCTAACAACTAATTCATCACTATTATTATCATCACAAACTCCTCCTCCTCCAGAACACCCAGAAACTATTGAGTTTTTTCCCATTTTAAAGGCTTCAGAGGAAGAAGAAGAACATGGAGTGGGGAATAATCATCATCATGAGGTTAAAGAAGAGAAGCTGGAACAACAACAACAACAGTTGATGATGACTACTGTGGCTTTGCACATTGGATTACCAACAAACAACACAGTAGGAGTTCTTTCTGATGATGATGAGAAGAAGAAGGTTTTCCATGTTAAGGAGGAAGAAGAAAAAGAAGAAGAATTGGAGAGAAGGTTGGAGAAGTGGTGGTTGAAGGAGGAAGAGAAGAGGTTTTGGATACCAAGTCCTTCACAAATCCTTGTTGGGCCTATGCAATTTGCTTGCTCCATTTGCAGCAAAACTTTCAATAGATATAACAATATGCAGATGCATATGTGGGGACATGGTTCGGAATTCAGGAAGGGACCAGACTCACTGAGAGGAACACAACCTGCGGCAATGCTAAGGCTGCCATGTTATTGCTGTGCACAAGGTTGCAAGAACAACATCAACCATCCAAGGGCAAAGCCCTTGAAGGATTTCAGAACCCTGCAAACACACTACAAGAGGAAGCATGGGAGCAAGCCATTCATGTGCAGAAAGTGCGGCAAAACATTTGCTGTTAAAGGTGATTGGAGGACTCATGAGAAGAATTGCGGTAAGCTTTGGTATTGCACTTGTGGTTCTGATTTCAAGCATAAGAGGTCCCTCAAGGATCATATTAGATCCTTTGGTAACGGTCACTCCCCTCATCCTTCTCTTGAAGGTTTTCATCATCATCACCACAATAATAAAGAATGCACTACTACTACTGCCTCTGATGATGATGATGCTTAA 1005 0.4139 MGLRENYSNVQDKNLYYCHSSNNNPSFIEWLKPSSSLTTNSSLLLSSQTPPPPEHPETIEFFPILKASEEEEEHGVGNNHHHEVKEEKLEQQQQQLMMTTVALHIGLPTNNTVGVLSDDDEKKKVFHVKEEEEKEEELERRLEKWWLKEEEKRFWIPSPSQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGSKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGNGHSPHPSLEGFHHHHHNNKECTTTTASDDDDA 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241700g00032 334 SUPERFAMILY beta-beta-alpha zinc fingers 152 192 IPR036236 -
Stsc241700g00032 334 PANTHER ZINC FINGER PROTEIN WIP2 31 321 IPR043584 GO:0003700|GO:0010468
Stsc241700g00032 334 Gene3D Classic Zinc Finger 168 191 - -
Stsc241700g00032 334 SUPERFAMILY beta-beta-alpha zinc fingers 239 273 IPR036236 -
Stsc241700g00032 334 Coils Coil 128 148 - -
Stsc241700g00032 334 FunFam Zinc finger protein WIP2 222 304 - -
Stsc241700g00032 334 SMART c2h2final6 253 273 IPR013087 -
Stsc241700g00032 334 SMART c2h2final6 216 248 IPR013087 -
Stsc241700g00032 334 SMART c2h2final6 169 191 IPR013087 -
Stsc241700g00032 334 ProSiteProfiles Zinc finger C2H2 type domain profile. 169 196 IPR013087 -
Stsc241700g00032 334 MobiDBLite consensus disorder prediction 309 328 - -
Stsc241700g00032 334 Gene3D Classic Zinc Finger 212 302 - -
Stsc241700g00032 334 ProSiteProfiles Zinc finger C2H2 type domain profile. 253 273 IPR013087 -
Stsc241700g00032 334 MobiDBLite consensus disorder prediction 298 334 - -
Stsc241700g00032 334 ProSitePatterns Zinc finger C2H2 type domain signature. 171 191 IPR013087 -
Stsc241700g00032 334 Pfam Zinc finger, C2H2 type 169 188 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241700g00032 Stsc-Chr241700 138642 142305 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241700g00032 21 326 C2H2 Transcription Factor Family AT1G08290 55.331 1.70e-119 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc241700g00032 zf-C2H2_6 0.00015 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241700g00032 - - ahf:112706908 462.225