Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241700g00030 ATGGCTGAAGAACACAGATGTCAAGCACCGCGTCTCTGCGCCAACAACTGCGGATTCTTCGGCAGCGCCGCCACGCAGAACCTCTGCTCCAAGTGCTACCACGATCTCCAGCTCAAGGAGCAACAATCCTCCTCCGCCAAGCTCGTTCTCAACCAATCCCTAGTTCCTCCATCTACGTCGCCCGCCGCCGTTGCTCAGCCGTCGTCCTCTTCGTTTCCGCCACCTGCAGCGATCGATTCGTCGCCTTCTTCGGCGGTAGATGCTGTGGATCAGCCACGCGCGGAAGAGGCGAAGCCGGTTCTCCAGAATCGATGCACGACGTGCAAGAGGCGCGTGGGACTCACGGGGTTCAAGTGCCGGTGTGGGTTGACGCTGTGCGGGACCCACCGGTACCCGGAGCAGCATGGTTGCGAGTTCGATTTCAAGGGATTAGGGAGGGACCAGATCGCGAAGGCGAATCCCGTCATCAAGGCTGAGAAACTTGACAAGATCTGA 495 0.5939 MAEEHRCQAPRLCANNCGFFGSAATQNLCSKCYHDLQLKEQQSSSAKLVLNQSLVPPSTSPAAVAQPSSSSFPPPAAIDSSPSSAVDAVDQPRAEEAKPVLQNRCTTCKRRVGLTGFKCRCGLTLCGTHRYPEQHGCEFDFKGLGRDQIAKANPVIKAEKLDKI 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241700g00030 164 Gene3D - 1 71 - -
Stsc241700g00030 164 Gene3D - 78 160 IPR035896 -
Stsc241700g00030 164 SMART AN1_Zf_4 105 142 IPR000058 GO:0008270
Stsc241700g00030 164 ProSiteProfiles Zinc finger A20-type profile. 7 41 IPR002653 GO:0003677|GO:0008270
Stsc241700g00030 164 SMART A20_3 10 34 IPR002653 GO:0003677|GO:0008270
Stsc241700g00030 164 PANTHER AN1-TYPE ZINC FINGER PROTEIN 9 164 - -
Stsc241700g00030 164 Pfam A20-like zinc finger 11 34 IPR002653 GO:0003677|GO:0008270
Stsc241700g00030 164 ProSiteProfiles Zinc finger AN1-type profile. 99 145 IPR000058 GO:0008270
Stsc241700g00030 164 MobiDBLite consensus disorder prediction 56 95 - -
Stsc241700g00030 164 SUPERFAMILY AN1-like Zinc finger 88 159 IPR035896 -
Stsc241700g00030 164 MobiDBLite consensus disorder prediction 56 78 - -
Stsc241700g00030 164 FunFam Zinc finger AN1-type containing 6 80 160 - -
Stsc241700g00030 164 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 12 58 - -
Stsc241700g00030 164 Pfam AN1-like Zinc finger 105 141 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241700g00030 Stsc-Chr241700 130717 131726 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241700g00030 1 164 C2H2 Transcription Factor Family AT3G52800 48.333 3.06e-48 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241700g00030 - - gmx:100807363 226.868