Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241700g00005 ATGGATTTTGACAACAATAACGAACAAGAATCATCACTTTATTCCTATTCTTCTTCTTCTTCTTTATCGCCATCTTCTTCTTCTTCCACTTCATCTCATCAAAGGCAACTCTTCTCACCGGTCCTCACAACACAGCAACATTCTCCACCACCTCACAAGAGGAGATCGGGGAGGAAGAAGTTCCGAGAGACGCGACACCCGGTGTATAGGGGTGTCCGGCAGAGGAACGGCAACAAGTGGGTTTGCGAAGTCAGAGAACCAATCAACAAATCAAGAATATGGCTCGGAACTTATCCTACCCCTGAAATGGCCGCTAGGGCACACGACGCCGCGGTTCTCGCACTTCGAGGCACCTCAGCCACCTTCAATTTCCCTCACTCCGTTGCCCTTCTTCCCATTGCCGAGTCATCTTCACCTCAACATGTTCGAGAAGCTGCATACAAAGCCGCACAACAACAAACTAATAATAATAATGATGATATTATTAGTAACCCTTCATCTTCTTTGAATATTGATCTTTGTTGTGTTGGTGTTGATGGCGGTGAGGAAGGAGTAGTGTGGAATTCTTCATCTACGGCGTTCTTTGATGAGGAGGCAGTGTTTAACATGCCTGCGTTGCTGGATAACATGGCGGAGGGTATGCTTATAACACCACCGTCCATGAAACGAGGACCATTTCATCTTCACCATGATCATGAATTTCAAACTGACCTCACTCTCTGGAATTTCGACTAA 735 0.4599 MDFDNNNEQESSLYSYSSSSSLSPSSSSSTSSHQRQLFSPVLTTQQHSPPPHKRRSGRKKFRETRHPVYRGVRQRNGNKWVCEVREPINKSRIWLGTYPTPEMAARAHDAAVLALRGTSATFNFPHSVALLPIAESSSPQHVREAAYKAAQQQTNNNNDDIISNPSSSLNIDLCCVGVDGGEEGVVWNSSSTAFFDEEAVFNMPALLDNMAEGMLITPPSMKRGPFHLHHDHEFQTDLTLWNFD 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241700g00005 244 PRINTS Ethylene responsive element binding protein signature 91 107 IPR001471 GO:0003700|GO:0006355
Stsc241700g00005 244 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700|GO:0006355
Stsc241700g00005 244 MobiDBLite consensus disorder prediction 1 69 - -
Stsc241700g00005 244 MobiDBLite consensus disorder prediction 51 66 - -
Stsc241700g00005 244 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 15 242 IPR045277 GO:0003700
Stsc241700g00005 244 SMART rav1_2 68 131 IPR001471 GO:0003700|GO:0006355
Stsc241700g00005 244 Gene3D AP2/ERF domain 68 127 IPR036955 GO:0003700|GO:0006355
Stsc241700g00005 244 MobiDBLite consensus disorder prediction 1 50 - -
Stsc241700g00005 244 ProSiteProfiles AP2/ERF domain profile. 68 125 IPR001471 GO:0003700|GO:0006355
Stsc241700g00005 244 FunFam Ethylene-responsive transcription factor 2 67 126 - -
Stsc241700g00005 244 SUPERFAMILY DNA-binding domain 68 127 IPR016177 GO:0003677
Stsc241700g00005 244 Pfam AP2 domain 67 117 IPR001471 GO:0003700|GO:0006355
Stsc241700g00005 244 CDD AP2 69 127 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241700g00005 Stsc-Chr241700 21503 22237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241700g00005 24 244 AP2-EREBP Transcription Factor Family AT5G51990 45.778 1.12e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc241700g00005 AP2 1.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241700g00005 - - aip:107610400 280.796