Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241699g00028 ATGGACCAGTACGAGAAGGTCGAGAAGATTGGGGAAGGAACCTACGGCGTCGTTTACAAGGCTCGCGATCGCGTCACCAACGAGACCATCGCTCTCAAGAAGATTCGCCTTGAGCAGGAGGATGAAGGCGTTCCTAGCACTGCCATTCGCGAGATTTCTCTCCTCAAGGAAATGCATCACAGGAACATTGTTAGGTTGCAGGATGTAGTGCACAGTGAGAAGCGATTGTATTTGGTTTTTGAGTATCTGGACTTAGATCTAAAGAAGCATATGGATTCATCTCCTGAGTTTGTGAAAGATCCGCGGCAAGTAAAAATGTTCCTTTATCAAATTCTCTGTGGCATTGCTTACTGTCATTCACATAGAGTTCTTCATCGAGACTTGAAACCACAGAATTTGTTGATAGATCGCCGCACTAATTCACTAAAGCTTGCAGATTTTGGATTGGCTAGGGCATTTGGCATTCCTGTCAGAACATTTACTCATGAGGTTTTGGGATGTATATTTGCGGAGATGGTAAACCGGCGACCTCTATTTCCTGGAGACTCTGAGATTGATGAATTGTTCAAAATATTCAGAATCATGGGCACCCCAAATGAAGATACATGGCCTGGAGTAACTTCATTGCCTGATTTTAAATCAACCTTTCCCAAGTGGCCACCTAAGGAGCTAGCTAATGTGGTTCCAAATCTTGACCCAGCGGGTCTTGACCTACTTTCTAGTATGCTTTGCTTGGATCCTAGCAAAAGAATAACCGCCAGGAATGCTGTAGAGCATGAATACTTCAAGGACATTAAATTTGTACCCTGA 810 0.4395 MDQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMHHRNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPEFVKDPRQVKMFLYQILCGIAYCHSHRVLHRDLKPQNLLIDRRTNSLKLADFGLARAFGIPVRTFTHEVLGCIFAEMVNRRPLFPGDSEIDELFKIFRIMGTPNEDTWPGVTSLPDFKSTFPKWPPKELANVVPNLDPAGLDLLSSMLCLDPSKRITARNAVEHEYFKDIKFVP 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241699g00028 269 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Stsc241699g00028 269 PANTHER CELL DIVISION PROTEIN KINASE 165 262 - -
Stsc241699g00028 269 Gene3D Transferase(Phosphotransferase) domain 1 165 267 - -
Stsc241699g00028 269 Pfam Protein kinase domain 4 154 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241699g00028 269 Pfam Protein kinase domain 165 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241699g00028 269 CDD STKc_CDK1_CdkB_like 4 262 - -
Stsc241699g00028 269 FunFam Cell division control protein 2 1 84 - -
Stsc241699g00028 269 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Stsc241699g00028 269 Gene3D Transferase(Phosphotransferase) domain 1 81 164 - -
Stsc241699g00028 269 ProSiteProfiles Protein kinase domain profile. 4 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241699g00028 269 SUPERFAMILY Protein kinase-like (PK-like) 1 265 IPR011009 -
Stsc241699g00028 269 Gene3D Phosphorylase Kinase; domain 1 1 80 - -
Stsc241699g00028 269 SMART serkin_6 4 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241699g00028 Stsc-Chr241699 133260 136497 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241699g00028 1 269 Core Cell Cycle Gene Families AT3G48750 76.871 1.76e-166 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Stsc241699g00028 Pkinase 3.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241699g00028 K02206 - gmx:100780359 516.924