Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241699g00020 ATGAAGAAATCACCAGTCTCTGAAGCTACTACTAATAAGGGTAAGGGTAAGGGTAAGGGAGACATGAAGAAGAAAACACCAGTCTCTTCTGAAGCTAGTAATAATAAGGGTAAGGCCACAGCACCCAGAACCACCACATATACCCGAGGCCGAAAGCGGAAACATGTTGATGAACCACAACAACAAGAACAAGCTGCTCCTGCTCCTGCCCCCTCTTCTACACAAGGTAGGTCCTTCACTTTCCAGCTTTCAGAGCCCGACGTGCTTGATTGCCCCATTTGCTTTGATCCACTTACCATTCCTGTCTATCAGTGTGAAAATGGTCACGTTGCTTGCTCTACTTGCTGCATCAGACTTGAGGAGAAGTGTCCCACATGCTGCTTGCCAATAGGTTCAATCCGTGTGAGAGTGTTGGAGAAACTATTGGAATCCATGAAAGTTCCATGCTCTCATGCAAAATACGGTTGCAGTGCCACATTCAGTTACACTGACAAGCGTGTCCATGAATCCAACTGCCTTTTTGTGCCCTGTTACTGTCCACACACAGATTGCGACTTTGTTTCCTCATTCTTTGATCTGCCTCTCCATTTCATAAGCGAACATGGTTCCTCTGCCGCTGTGAGATTTTCCCATGATAAACCATTCGCTGTCACACTCTCCGAAGATGATGATGAAGCCATTGTACTCCAAGAAGAGACTGATGACACGTTGTTCGTACTCCACAATTTTGTGTTCAGTCTTGGAAAGGCGGTTAATGTTTGCTGCATTCAGCCTGATTCATTGCCTAAATATCGATTCGAAATTATGGCAAAGTCCCAGGGAAGCAGTCTGGAGTGGAAGTCTTTTACCATGAACATTCAAAGTTCTAATGTGGACACTACTCTTTCATCAAGGTTCCTGGTGATTCCATCTGATTATTTTGGTGACCTGGAAATATGCATACATATGTAG 951 0.4469 MKKSPVSEATTNKGKGKGKGDMKKKTPVSSEASNNKGKATAPRTTTYTRGRKRKHVDEPQQQEQAAPAPAPSSTQGRSFTFQLSEPDVLDCPICFDPLTIPVYQCENGHVACSTCCIRLEEKCPTCCLPIGSIRVRVLEKLLESMKVPCSHAKYGCSATFSYTDKRVHESNCLFVPCYCPHTDCDFVSSFFDLPLHFISEHGSSAAVRFSHDKPFAVTLSEDDDEAIVLQEETDDTLFVLHNFVFSLGKAVNVCCIQPDSLPKYRFEIMAKSQGSSLEWKSFTMNIQSSNVDTTLSSRFLVIPSDYFGDLEICIHM 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241699g00020 316 CDD RING-HC_SIAHs 89 126 - -
Stsc241699g00020 316 ProSiteProfiles Zinc finger RING-type profile. 91 126 IPR001841 -
Stsc241699g00020 316 MobiDBLite consensus disorder prediction 27 46 - -
Stsc241699g00020 316 ProSiteProfiles Zinc finger SIAH-type profile. 144 202 IPR013010 GO:0008270
Stsc241699g00020 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 197 IPR013083 -
Stsc241699g00020 316 SUPERFAMILY TRAF domain-like 145 308 - -
Stsc241699g00020 316 Pfam Seven in absentia protein family 133 303 IPR018121 GO:0005737|GO:0006511|GO:0007275
Stsc241699g00020 316 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 34 315 IPR044286 -
Stsc241699g00020 316 MobiDBLite consensus disorder prediction 1 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241699g00020 Stsc-Chr241699 84970 86073 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241699g00020 87 305 C3H Transcription Factor Family AT2G41980 28.017 3.91e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241699g00020 K04506 - gmx:100778869 239.965