Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241699g00019 ATGAAGAAATCATCACAAGACTCTGAAGGTAGTAATAATGGTAAGGGTAAGGACACAGCACCCAGAAGCACCACAACTCGAAGCCGAAAGCGGAAACATGTTGAAGAACAAGAACAAGTTGCTGCTCCTGCTGCTGTAGTTGCCTCTTCTACACAAGGTAGTAGCTCCTTCACTGTCCTCATTTCTGACCCGGATGTGCTTGACTGCCCCATTTGCTTTGATTCATTCACTATTCCAATCTATCAGTGTGAAAATGGTCACGCTGCTTGCTCTACTTGCTGTATCAATCTGGAGAAGTGTCCCACATGCTCCTTGCAAATGGGTTCAATCCGTGTTAGAGCCTTGGAAAAAGTGTTGGAATCCATGAAAGTTCCATGCTCTCATGCAAAATACGGTTGCAATGCCACCTTCAGTTACACTGCCAAGTCTGCCCATGAATCCAACTGCATTTTTGTGCCGTGTCACTGTCCACACACGGATTGTGACTTTGTTTCCTCATTCTATGATCTGCCTCTCCACTTCATAAGTGAACATGATTCTTCTGCAGCTGTAAGATTTTCATATGATGAACCCTTCACTGTCACACTCCACCAATCTGAAGATGATGGAGTCATTGTACTCCAAGAAGAGACTGATGACACTTTGTTCATACTCCACAGTTTTATGTTCAGTCTTGGAAAGGCGGTTAATGTTTGCTGCATTCAGCCTGATTCATTGCCTAAATATCGGTTCGAAATTCTGGCAAAGTCCTCCAAGGGAAGCAGTCTGGAGTGGAAGTCTTTAACTGTGAACATTCAAAGGTCTACTGTGGACACTACTCTTTCATCAGAGTTCCTATTGATTCCATCTGGTTATTTTGGTGATGACCTGGAAATTTGCATACGTATGTAA 891 0.4343 MKKSSQDSEGSNNGKGKDTAPRSTTTRSRKRKHVEEQEQVAAPAAVVASSTQGSSSFTVLISDPDVLDCPICFDSFTIPIYQCENGHAACSTCCINLEKCPTCSLQMGSIRVRALEKVLESMKVPCSHAKYGCNATFSYTAKSAHESNCIFVPCHCPHTDCDFVSSFYDLPLHFISEHDSSAAVRFSYDEPFTVTLHQSEDDGVIVLQEETDDTLFILHSFMFSLGKAVNVCCIQPDSLPKYRFEILAKSSKGSSLEWKSLTVNIQRSTVDTTLSSEFLLIPSGYFGDDLEICIRM 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241699g00019 296 CDD RING-HC_SIAHs 67 104 - -
Stsc241699g00019 296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 112 IPR013083 -
Stsc241699g00019 296 MobiDBLite consensus disorder prediction 7 21 - -
Stsc241699g00019 296 MobiDBLite consensus disorder prediction 1 47 - -
Stsc241699g00019 296 Pfam Seven in absentia protein family 110 281 IPR018121 GO:0005737|GO:0006511|GO:0007275
Stsc241699g00019 296 ProSiteProfiles Zinc finger SIAH-type profile. 121 179 IPR013010 GO:0008270
Stsc241699g00019 296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 174 IPR013083 -
Stsc241699g00019 296 SUPERFAMILY TRAF domain-like 122 287 - -
Stsc241699g00019 296 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 15 295 IPR044286 -
Stsc241699g00019 296 MobiDBLite consensus disorder prediction 22 38 - -
Stsc241699g00019 296 ProSiteProfiles Zinc finger RING-type profile. 69 104 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241699g00019 Stsc-Chr241699 74166 75520 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241699g00019 34 291 C3H Transcription Factor Family AT2G41980 30.072 5.55e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241699g00019 K04506 - csav:115722869 225.328