Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241699g00011 ATGGCACAACCTGGGTGTGATTCAATGTGTGGAGATGTTGAGATTCCTTACCCATTTGGAATGAATGATCCAAAATGCTATGCAGAAGAGGGGTTCCAAATAGAATGCAGGGGTAAACACAATCACAAACCATACCTCAAGCTTATAAACCTTGAAGTGACAGCCATTGATGTTAACACAAGCACGGTTGAGGTTAAGAATCCAATTTTCCATAGGAAGTGTCACCCCGGAGGAATAGATTATTCTCCTTCTCATCCAAATGTAACCATCCAAGGCTCTGCAAATATTTCTCTGAGAGGTAGCCCCTTTGTGTATTCCAACAAGCGAAACACATTCCTGGCTTTCGGTTGCAACATTCTTGGATTCTTGCACTCCAACCGTACAACAGTCGCTGGCTGCGTGTCAGTTTGCGGTCGAAATGAGTCCAGGAGACTCAGGAAATTAGTGACCATGGGAAAAAAGGTTAGACTTGGTTGCCATGGAAAGTTTTGTTGTGTTGCTTCACTGCCAAGTCATTTATCAGAGTTCAACGTGACAATGGAAGATATAAGAAACGGAAGTATTGCTCCCGGGTGCAATGACTATGCTCTGATAACAAAACAATGGAAACAGGAATCCACTTGGATGCTGAATGAGAAAGGGAGTCAACGCAAGAAGAATGTGAATGACTATGCAATTGCTGTGCTTGAGTTTGAGATTCTGGATTTGACTAAGATTGAAGCAACTAATGCAGAATGTCGTGAGAGTAATGTGACTTCCTCAAATATGGGGAAGAACTCTGGTTGGAGATGCAAATGCAGAGTAGGATTCCATGGGAACCCATACATTGCTGGTGGCTGTGTAGTTATTCGAGACCGTTGGTACCATCCCAAAGGAACTCCCACAAAAGAGCTTATGGTTGGACTTTTGTCAAGCCTCGGATCCATTATCCTATTAGTTGGTCTAAGGTGGCTCTATGAAACTGAAAGGAAAAGAATAGCAAAAAAGAGCAGAGAAAGTTTCTTCAAAAAGAATGGTGGTCTTCTGTTACAAAAGGTAGTGTCTTCTAGTGAAGGTAGTTTTGATAAATTTAAACTCTTCAGCTTAAAGGACTTAGAAAAGGCCACAAACCACTTTAATCCGAACCGGATACTTGGAAATGGAGGCCAAGGTACTGTTTACAAGGGAATGTTAGTTGATGGCAAAATTGTGGCAGTTAAGAAGTTTAAGGTCGACGGAAAGATCGAACAATTCATCAATGAATTTGTTATTCTTTCGCAAATTGACCATAGAAATGTGGTTAAATTGTTGGGGTGTTGTTTGGAAACAGAAATTCCTCTACTTGTTTATGAATTCATTCCCAATGGGACCCTTTTTGAATATTTGCATGAACAAGATGAATATCTACCAATGACATGGGAAATGCGTTTGAAGATTGCCATTGAAGTTGCAGGAGCTCTATTCTATTTACATTCAGCAGCTTCTAAGCCCATTTATCACAGAGATATCAAATCAACCAATATACTATTGGATGAAAAGTACAATGCAAAAGTGGCTGATTTTGGAACATCCAAAATGATTGCCATTGAAGATACTCACCTTACCACACTAGTTAAAGGAACTTTCGGATACTTGGATCCTGAGTATTTTCATACTAGTCAATTTACAGATAAGAGTGATGTCTATAGTTTCGGAGTAGTTCTTGTTGAACTTCTAACAGGGCAAAAGCCAGTTTCCTTTGTTGCCCCGGGCGAAGCGCAAAATTTAGCTTCATACTTTATTTTGTGCATGGAGGAAAACCGTGTGTTTGACATCATTGACAAAAGAATCATGTGGGAAGGAAGGAGAGAGCATATCAATGCAGTTGCCAAGCTCGCCAAAAGATGTTTAGACCTCAAAGGTATTGAGAGGCCTAGTATGAAGGAAGTCACAATGGAATTGTATGGTATATGGGAAATGCAAAGAAATTCTAGTGCATAA 1959 0.4022 MAQPGCDSMCGDVEIPYPFGMNDPKCYAEEGFQIECRGKHNHKPYLKLINLEVTAIDVNTSTVEVKNPIFHRKCHPGGIDYSPSHPNVTIQGSANISLRGSPFVYSNKRNTFLAFGCNILGFLHSNRTTVAGCVSVCGRNESRRLRKLVTMGKKVRLGCHGKFCCVASLPSHLSEFNVTMEDIRNGSIAPGCNDYALITKQWKQESTWMLNEKGSQRKKNVNDYAIAVLEFEILDLTKIEATNAECRESNVTSSNMGKNSGWRCKCRVGFHGNPYIAGGCVVIRDRWYHPKGTPTKELMVGLLSSLGSIILLVGLRWLYETERKRIAKKSRESFFKKNGGLLLQKVVSSSEGSFDKFKLFSLKDLEKATNHFNPNRILGNGGQGTVYKGMLVDGKIVAVKKFKVDGKIEQFINEFVILSQIDHRNVVKLLGCCLETEIPLLVYEFIPNGTLFEYLHEQDEYLPMTWEMRLKIAIEVAGALFYLHSAASKPIYHRDIKSTNILLDEKYNAKVADFGTSKMIAIEDTHLTTLVKGTFGYLDPEYFHTSQFTDKSDVYSFGVVLVELLTGQKPVSFVAPGEAQNLASYFILCMEENRVFDIIDKRIMWEGRREHINAVAKLAKRCLDLKGIERPSMKEVTMELYGIWEMQRNSSA 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241699g00011 652 CDD STKc_IRAK 378 640 - -
Stsc241699g00011 652 Gene3D Phosphorylase Kinase; domain 1 344 445 - -
Stsc241699g00011 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 491 503 IPR008271 GO:0004672|GO:0006468
Stsc241699g00011 652 Pfam Wall-associated receptor kinase galacturonan-binding 6 66 IPR025287 GO:0030247
Stsc241699g00011 652 FunFam Wall-associated receptor kinase 2 342 445 - -
Stsc241699g00011 652 SMART serkin_6 372 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241699g00011 652 ProSiteProfiles Protein kinase domain profile. 372 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241699g00011 652 FunFam Wall-associated receptor kinase 2 446 652 - -
Stsc241699g00011 652 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 2 643 IPR045274 GO:0007166
Stsc241699g00011 652 Gene3D Transferase(Phosphotransferase) domain 1 446 652 - -
Stsc241699g00011 652 SUPERFAMILY Protein kinase-like (PK-like) 354 641 IPR011009 -
Stsc241699g00011 652 Pfam Protein kinase domain 374 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241699g00011 Stsc-Chr241699 54406 56787 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241699g00011 6 643 Receptor kinase-like Gene Family AT1G69730 43.417 8.08e-175 516
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Stsc241699g00011 Pkinase 2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241699g00011 - - adu:107483204 1152.12