Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241699g00009 ATGGAAAAAAACTTCAAAAAGAATGGAGGTTTGCTGTTAGAAAAAAGACTATCTTCAGGTGAAGTTAATGTTGACAAAGTCAAACACTTCAGCTTAAAGGAGTTAGAGAAGGCCACAGATAACTTCAACATGAACAGAGTCCTAGGTAAGGGAGGACAAGGCACCGTCTACAAAGGAATGCTTGTAGATGGAAAGATTGTTGCAGTAAAAAAGTTTAGAGTCCAAGGGAATGTTGAAGAGTTCATCAATGAATTCGTCATCCTTTCACAAATTAACCATAGAAACGTGGTTAAGTTGTTAGGATGTTGTTTGGAGAAAGAAATTCCCTTGCTTGTTTATGAGTTCATCCCTAATGGAAATCTTTATGAATATTTGCATGACCAAAATGAGGACTTGCCAATGACATGGGATATGCGTTTGAGAATTGCAACTGAGATTGCAGGAGCACTTTTTTACTTACACTCTGCTGCTTCTCAACCAATTTATCACAGAGATGTGAAGTCAACAAATATACTATTGGATGGAAAGTACAGAGCAAAAGTAGCTGACTTTGGAGCTTCTAGAATGATCTCTATAGAAGACACTCATCTCACCACAGTTGTTCAAGGAACTTTCGGATATTTAGATCCTGAATACTTTCACACTAGTCAGTTGACAGAAAAGAGTGATGTTTACAGTTTTGGAGTTGTTCTTCTTGAACTATTGACAGGACAAAAGCCATTATCCTCCTTAAGACCCAACGAAGCCAAAAGTTTGGCTTCCTATTTTGTTCTGTGCGTGGAGGAAGATCGTTTGTTTGACATAATCGACGATAGGGTGACAAAAGAAGGAGAGAAGGAACATATCATTGCAGTTGCAAATCTTGCATATAAATGCATTGAGCTCAATGGGAAAAAAAGGCCAACTATGAAAGAAGTCACAAGAGAATTGGATGAGATCTGGAAACTGGAGAGGAAGTCTAATAATGGACAACAAAATCATCATGAAGAAATTGAGCATCCTGCAATTGATGCAATTGAATATCAGCATCCATGGGTTGCTGATTCAACTTCTTCTGATATTAGTCCAAGCAACATAACATTCACCTTAGAGTTAGAGGTCATGCATATTCTTACTGAATAG 1122 0.377 MEKNFKKNGGLLLEKRLSSGEVNVDKVKHFSLKELEKATDNFNMNRVLGKGGQGTVYKGMLVDGKIVAVKKFRVQGNVEEFINEFVILSQINHRNVVKLLGCCLEKEIPLLVYEFIPNGNLYEYLHDQNEDLPMTWDMRLRIATEIAGALFYLHSAASQPIYHRDVKSTNILLDGKYRAKVADFGASRMISIEDTHLTTVVQGTFGYLDPEYFHTSQLTEKSDVYSFGVVLLELLTGQKPLSSLRPNEAKSLASYFVLCVEEDRLFDIIDDRVTKEGEKEHIIAVANLAYKCIELNGKKRPTMKEVTRELDEIWKLERKSNNGQQNHHEEIEHPAIDAIEYQHPWVADSTSSDISPSNITFTLELEVMHILTE 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241699g00009 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Stsc241699g00009 373 CDD STKc_IRAK 48 313 - -
Stsc241699g00009 373 ProSiteProfiles Protein kinase domain profile. 42 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241699g00009 373 SMART serkin_6 42 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241699g00009 373 FunFam Wall-associated receptor kinase 2 12 115 - -
Stsc241699g00009 373 FunFam Wall-associated receptor kinase 2 116 333 - -
Stsc241699g00009 373 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 2 320 IPR045274 GO:0007166
Stsc241699g00009 373 Gene3D Transferase(Phosphotransferase) domain 1 116 339 - -
Stsc241699g00009 373 SUPERFAMILY Protein kinase-like (PK-like) 23 310 IPR011009 -
Stsc241699g00009 373 Gene3D Phosphorylase Kinase; domain 1 14 115 - -
Stsc241699g00009 373 Pfam Protein tyrosine and serine/threonine kinase 43 310 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241699g00009 Stsc-Chr241699 46894 48015 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241699g00009 5 313 Receptor kinase-like Gene Family AT1G79670 65.273 1.49e-145 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Stsc241699g00009 PK_Tyr_Ser-Thr 5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241699g00009 - - ahf:112796208 567.77