Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241699g00008 ATGAACGATCCCGCGTGCTACGCAGGGAAGGAATTCGAAATACAATGCAACATCAGTTACCCGAACGGGAAACCCACTCCAACCCCATACCTGAAGCCTATAAACGACGACGTTCAACAACTTCAAGTGGTATCCATTGATGTGTTGAACGGCACGCTCGTTTTCTACAACCCAGCCGTGACTTTAGGCTGCCATCGCCAAGGTACGATTCCGAATAAAGTGATAGATCTGAGAGGTTCCCCCTTTGTATATTCCCAAAAGAGGAACAAGTTCGTGGTCCTGGGCTGCAACATAGTTACGTATTTGGTTTCAAACGGCATACAAGTTGGAGCGTGTGCGTCCATCTGCGATAGCGATGCCGACGCTTATAGCTTCGAGGAAACCGCAGCCAATTATTGCAGCGGCAAGTATTGCTGTGAATCTTCGTTGCCTTTGTACCTCACGGAATTCAATGTCACAGTTGAAAGCCTCAGAAAGAGTAGTGATAACCAGAACCAATCGAAGAGTGATGATAAGTGCAGCTATGCGGTGATTGCGGAAGAAGAAGCTTGGGAGGGTTCAGGTTACGCGCTTAGGGATTTGACGAATGCGAATATTATTGCGGTGCTTGAGTGGGAAATTGTGAGCTCAAGTTTGGAACTGCCATATAACTGCAATAACACCAATGTTACGTCTTCCCAACACAGTCACTCAGGTAGGAGATGCTACTGCGACCTTGGATTCACCGGCAATCCCTACATTCAGGGAGGCTGTGTTAAAGGAATAATCTTAGGAAGCATAGGATCCATCATTTTATTCCTTGGTTCATGGTGGTTATATAAAGTTGTAAGAAAAAGAATAGCAAAGAAGCGCAAAGATAGAAACTTCAAACAAAATGGAGGATTGTTGTTGCAACAGAGATTGACCACGGGTGAAGTTAGTGTTGAAAAAGTCAAACACTTCAGCCTTAAGGATTTGGAGAAGGCCACCGACAACTTCAATGTGAACAGAGTGCTTGGAAAAGGAGGCCAAGGTACTGTCTACAAGGGCATGCTTGTTGATGGACAAATTGTAGCAGTTAAGAAGTTCAAGGTTGAAGGAAATGTTGAAGAATTCATCAACGAATTCGTCATACTTTCACAAATCAACCATAGAAATGTGGTTAAGTTGTTAGGCTGCTGTTTGGAAACAGAGATTCCTCTGCTTGTTTATGAGTTCATTCCCAATGGTAATCTCTTCCAATATTTGCATGACCAAAATGAAGACTTACCAATGACATGGGAAATGCGTTTGAGAATTGCCACTGAAGTTGCAGAAGCCATATTTTACTTGCATTCAGCTGCTTCTCAACCCATTTATCATAGAGATGTGAAATCAACAAATATATTGTTAGATGGAAAATACAGAGCAAAAGTAGCTGACTTTGGAGCATCTAAAATGATTTCTCTTGAAGATACTCACCTCACTACTGCAGTTCAAGGAACCTTTGGCTACTTAGATCCCGAATACTTTCATACTAGTCAATTGACAGAGAAAAGTGATGTGTATAGTTTCGGAGTAGTTCTTGTTGAGCTCTTAACCGGACAAAAACCGATATCATCGTCAAGAACTGAAGAAGCCAAAAGTTTGTCTCATTATTTTGTTAGCTCTATGGAGGAAAATCGCCTGTTTGATATCATTGACGAAAGAGTGGCAAAAGAGGGAGAAAGAGAACACATAGTTACAGTTGCCAATCTTGCTTATAGGTGCCTAGAATTAAATGGGAGAAAAAGGCCGAGTATGAAAGAAGTTACAAGTGAACTATATAAGATCCTGAAGTTGGAAATGAAGCCTATTGCACAACAAAAAATTGAAGAAATTGAGTTTGCTGGAATCGAAGATTACCAATCTTGGGCTGCATCTTCTGCTTCTGATATAGGTTCAAATTCAACTCTAAGCAACACAATACCTACTTCAAAGTCAGAGATAATGATGCCTATTCTCTTCAAATGA 1971 0.414 MNDPACYAGKEFEIQCNISYPNGKPTPTPYLKPINDDVQQLQVVSIDVLNGTLVFYNPAVTLGCHRQGTIPNKVIDLRGSPFVYSQKRNKFVVLGCNIVTYLVSNGIQVGACASICDSDADAYSFEETAANYCSGKYCCESSLPLYLTEFNVTVESLRKSSDNQNQSKSDDKCSYAVIAEEEAWEGSGYALRDLTNANIIAVLEWEIVSSSLELPYNCNNTNVTSSQHSHSGRRCYCDLGFTGNPYIQGGCVKGIILGSIGSIILFLGSWWLYKVVRKRIAKKRKDRNFKQNGGLLLQQRLTTGEVSVEKVKHFSLKDLEKATDNFNVNRVLGKGGQGTVYKGMLVDGQIVAVKKFKVEGNVEEFINEFVILSQINHRNVVKLLGCCLETEIPLLVYEFIPNGNLFQYLHDQNEDLPMTWEMRLRIATEVAEAIFYLHSAASQPIYHRDVKSTNILLDGKYRAKVADFGASKMISLEDTHLTTAVQGTFGYLDPEYFHTSQLTEKSDVYSFGVVLVELLTGQKPISSSRTEEAKSLSHYFVSSMEENRLFDIIDERVAKEGEREHIVTVANLAYRCLELNGRKRPSMKEVTSELYKILKLEMKPIAQQKIEEIEFAGIEDYQSWAASSASDIGSNSTLSNTIPTSKSEIMMPILFK 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241699g00008 656 FunFam Wall-associated receptor kinase 2 400 616 - -
Stsc241699g00008 656 CDD STKc_IRAK 332 597 - -
Stsc241699g00008 656 Gene3D Phosphorylase Kinase; domain 1 298 399 - -
Stsc241699g00008 656 SUPERFAMILY Protein kinase-like (PK-like) 310 602 IPR011009 -
Stsc241699g00008 656 SMART serkin_6 326 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241699g00008 656 Gene3D Transferase(Phosphotransferase) domain 1 400 619 - -
Stsc241699g00008 656 ProSiteProfiles Protein kinase domain profile. 326 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241699g00008 656 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 17 598 IPR045274 GO:0007166
Stsc241699g00008 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Stsc241699g00008 656 FunFam Wall-associated receptor kinase 2 296 399 - -
Stsc241699g00008 656 Pfam Protein kinase domain 327 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241699g00008 Stsc-Chr241699 36823 39453 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241699g00008 6 597 Receptor kinase-like Gene Family AT1G16120 43.268 5.55e-169 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Stsc241699g00008 Pkinase 5.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241699g00008 - - ahf:112796208 810.446