Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241699g00006 ATGGCAAAAAAACCAGCTTCTCTTTCATCATTTCTCTTTGCAACATCTCTTCTTCTAACCCTAATTTCTTCTTCTTTGGCATCACCAACACCATCGTCACTCTATGGCACACTCCTTCACTGCCTCTCACACAGCCCAAACTCATCAACACTCGCCACCAACATAGTCTTTGACAGAACCAATGCTTCTTTCCCCACACTTCTCCAAAACTACATCCGCAATGCCAGGTGGAACACAACCACAACACCAAAGCCATTGATCATCATCACACCCCTTCAAGAATCCCAAGTTCAAGCCACAGTCATCTGTGCCAAGTCCATTGGGATCCAAATCAGGATCCGAAGCGGCGGCCACGACTACGAAGGCCTTTCCTATGTCTCCAAACAACCCTTCATCGTTCTTGACATGTCCAATCTCCGGCAAATAACCGTCGACATTTCAAAAGAAGTTGCCACGGTTCAAGCAGGAGCCACGCTTGGAGAACTTTACTATAATATATGGAAGAACAGCAAAATCCATGGCTTTCCCGCAGGACTGTGCACCACTATTGGTGTTGGCGGCCACATAAGCGGCGGAGGCTACGGTTCCATGTTGAGAAAATACGGTTTATCCGTTGATAATGTAATTGATGAGAAAATAGTTGATGTTAAGGGTAGAATACTTGATAGGAACTCAATGGGGGAGGATCTGTTTTGGGCTATTAGAGGCGGCGGCGGAGCGAGCTTTGGTGTAGTTTTATCGTACACAGTTAAGTTAGTTTCGGTACCTGAAACTGTAACCGTTTTTAACGTGGAAAGGATGGAAGAGAATGCAATTGATCTTGCCGTTCAGTGGCAACAAGTTGCTCCAACCATTGATGATAGGTTTTTCATTAGTCTTCATTTATCGCCTTCGGGTTCCGATGAGAAGAAAACGGTTAGAGCCAGTGTTACGGCGCTTTTTCTAGGCGGTGCTGATGAGGCCGTTTCGATATTGAGGAAGGAGTTTCCGATTCTTGGAATCGGAAAAGAGAATTGCACTGAGATGAGCTGGATTGAAGCTATGATTTGGAACCCTGCCGATCCCAAGATCGGTGTTAAGCCGGAGGAGATTCTGCTGAATCGGCATCTCAATTCTGCTGTTTTCCTCAAGAGAAAATCTGATTATGTTCAGGTTCCGATCTCGAAAGAAGGACTGGAGGGGATATCGAAGAAGATTATGGAGGGAAATGTTGTGCTTGGGTTCAATCCTTATGGCGGGAAGATGGCTGAGATTCCGGCAGACGCCACGGCTTTCCCTCACCGTGCGGGGAACTTGTTCAAGATTCAGTATACTGTGAATTGGGATGATCCATCACCTGCAGCGGCTCAGAAATTTGTTAATCAGGCGAGGAGTTTGTACAGTTACATGACTCCATTTGTGTCAAAGAATCCAAGAAGCGCGTTCTTGAATTATAGAGACATTGACATTGGAATCAATACGTTTGGTAATAAGGATAGTTATGAAGAAGGGAAGGTTTATGGGGCTAAATACTTCAATGGCAATTTTGAGAGGCTCGTGAAGATTAAGACTGCGGTTGATCCTGACAACTTTTTCTGGAATGAACAGAATCCAACCATAGCAAAACCTGGTTGCGTTTCCACATGTGGCGACGTTGACATCGCTTACCCTTTTGGGATGAACGATCCCAAATGCTATGCTCACAAATTTTTCCAGATAGAGTGCAAAAATCACAAGCCTTACCTTTCATCATTCAATCTTGAAGTCACACATATTTATGAAAATATTAGCGCGGTGGAGATCAAGAACCCAATCTACTACAGCTGTCAAAGCAAAAACGCTATCATAGACCTAAGAGGAAGCCCTTACGTGTATTCCCAAGAATACGACAGATTCATGGCCGTTGGCTGCAACAAACTAGCGTTCTTGCGTTCCAACGGATCAACGGTTGGCGGTTGCGTGTCCATTTGCGACAACGGTGAAGCAGTTGGCGAGGTTGAATTCCAAAAGGACGGTTGCCATGGGAGATACTGCTGTGCGATGTCACTGCCAATGATTCTTTCGGAGTACAACGCAACAATAGGGGATCTTGGAGACGGAAGTCACAGCAACATGTGTAGCTATGCGATGGTTGTGAGTGATGCTTGGATTCAGAGTTATGGTTTGGGGATTCAGAAGCTTAGTAACGTAGAGAACATGAATGATGTTCCTGCGGTTCTTGAGTGGGAGATTCGCTATGATTTGGGGATCAATTATTCAACCCTCTCTTCTTCAGCTCATGCTCGTTGTAACGGTTCCAGTCTTACGTCTCCAACCAACAATATCTCGGGTTTTAGGTGTCGATGCTTCGATGGCTACGATGGCAATCCTTACATTGAAGGTGGTTGCAAAGCTGTGGCATCCGGTAAAGAAAATCGATCTAAGTGGGCTATAATAGGAGTTTCATCAAGTCTTGGGTCTGTCATTTTACTCCTTGTTGGATGGTTGTTGTACAAACTTATAAGGAAGAGAATAATAAACAAACGCAAGCAAAACTTCTTCAAGAAAAATGGCGGTTTGTTGTTAAAACAAAAATTGTCTTCATCAGGCGAAGAAAATCTTGACAAAGTTGTTCTCTTCACCTTAAACGAGTTAGAAAGTGCCACTGATAACTTCAACCTGAACAGAGTTCTTGGAAAAGGAGGCCAAGGTACCGTCTACAAAGGCATGCTAGTAGATGGCAAAATCGTTGCAGTAAAAAAATTCAAAGTCCAAGGAAACACTGCAGAATTCATCAATGAATTTCTTGTTCTTTCTCAAATTAACCACAGAAATGTGGTTAAGTTGTTGGGGTGTTGTTTTGAGGCTGAAGTTCCTTTGCTCGTTTATGAATTCATTCCCAATGGTAACCTTTTCGAATATCTTCATGAACAAAATGATCAAGATTTACCAATGATGACATGGGATATGAGATTGAGAATTGCAAGTGAGATTGCAGGGGCACTGTTTTATCTACACTCCATTGCTTCTCAACCCATTTATCATAGAGATATCAAATCAACAAATATACTATTGGATGAAAAGTACAGAGCAAAAGTGGCAGATTTTGGAACTTCTAGAATAGTTTCTGCTGAAGCTACTCATCTCACTACTGTAGTCCAAGGTACTTTTGGATATTTAGATCCTGAATATTTTCAAACTAGTCAGTTTACTGATAAGAGCGATGTGTATAGTTTCGGAGTAGTGCTTGTTGAACTTTTAACCGGACAAAAGGCGATATCGTCGGCTTTAAGATCAGATGAAGTGAGGGGCTTAGCTTCGTTTTTTGTTGTGTGTATGGAGGAGAATAGGGTATTTGAGATTGTTGACAAAAGAGTGATGAAGGAGGGAGAGAAGGAACATATTATTGCAGTGGCTAATCTTGCATATAGGTGTTTAGAGATGAATGGGAGAAGAAGGCCTACTATGAAAGAAGTTACGTTGGAATTGGAAGGGATTAGAAGATTGGATTATTGGAAGAGTAGTGGTGGTGGTCCGGCACAAGAAAACTATGAAGAAATTGAGATTGATAGGAATGAAGATAACCAACTATGGGATAGATATTCTAATGTGTCAGAAACATTACATACCACTACCACCACTACTACAAGTAGCAGCAGAGAACTCTCTGAGGTTATGCCTATTCTTGGAATCAAATAA 3657 0.4258 MAKKPASLSSFLFATSLLLTLISSSLASPTPSSLYGTLLHCLSHSPNSSTLATNIVFDRTNASFPTLLQNYIRNARWNTTTTPKPLIIITPLQESQVQATVICAKSIGIQIRIRSGGHDYEGLSYVSKQPFIVLDMSNLRQITVDISKEVATVQAGATLGELYYNIWKNSKIHGFPAGLCTTIGVGGHISGGGYGSMLRKYGLSVDNVIDEKIVDVKGRILDRNSMGEDLFWAIRGGGGASFGVVLSYTVKLVSVPETVTVFNVERMEENAIDLAVQWQQVAPTIDDRFFISLHLSPSGSDEKKTVRASVTALFLGGADEAVSILRKEFPILGIGKENCTEMSWIEAMIWNPADPKIGVKPEEILLNRHLNSAVFLKRKSDYVQVPISKEGLEGISKKIMEGNVVLGFNPYGGKMAEIPADATAFPHRAGNLFKIQYTVNWDDPSPAAAQKFVNQARSLYSYMTPFVSKNPRSAFLNYRDIDIGINTFGNKDSYEEGKVYGAKYFNGNFERLVKIKTAVDPDNFFWNEQNPTIAKPGCVSTCGDVDIAYPFGMNDPKCYAHKFFQIECKNHKPYLSSFNLEVTHIYENISAVEIKNPIYYSCQSKNAIIDLRGSPYVYSQEYDRFMAVGCNKLAFLRSNGSTVGGCVSICDNGEAVGEVEFQKDGCHGRYCCAMSLPMILSEYNATIGDLGDGSHSNMCSYAMVVSDAWIQSYGLGIQKLSNVENMNDVPAVLEWEIRYDLGINYSTLSSSAHARCNGSSLTSPTNNISGFRCRCFDGYDGNPYIEGGCKAVASGKENRSKWAIIGVSSSLGSVILLLVGWLLYKLIRKRIINKRKQNFFKKNGGLLLKQKLSSSGEENLDKVVLFTLNELESATDNFNLNRVLGKGGQGTVYKGMLVDGKIVAVKKFKVQGNTAEFINEFLVLSQINHRNVVKLLGCCFEAEVPLLVYEFIPNGNLFEYLHEQNDQDLPMMTWDMRLRIASEIAGALFYLHSIASQPIYHRDIKSTNILLDEKYRAKVADFGTSRIVSAEATHLTTVVQGTFGYLDPEYFQTSQFTDKSDVYSFGVVLVELLTGQKAISSALRSDEVRGLASFFVVCMEENRVFEIVDKRVMKEGEKEHIIAVANLAYRCLEMNGRRRPTMKEVTLELEGIRRLDYWKSSGGGPAQENYEEIEIDRNEDNQLWDRYSNVSETLHTTTTTTTSSSRELSEVMPILGIK 1218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241699g00006 1218 Pfam Wall-associated receptor kinase galacturonan-binding 538 588 IPR025287 GO:0030247
Stsc241699g00006 1218 CDD STKc_IRAK 884 1152 - -
Stsc241699g00006 1218 Pfam Berberine and berberine like 474 530 IPR012951 GO:0016491|GO:0050660
Stsc241699g00006 1218 SUPERFAMILY FAD-binding/transporter-associated domain-like 65 256 IPR036318 GO:0050660
Stsc241699g00006 1218 SUPERFAMILY Protein kinase-like (PK-like) 861 1149 IPR011009 -
Stsc241699g00006 1218 Gene3D - 144 529 IPR016169 -
Stsc241699g00006 1218 Pfam Protein kinase domain 879 1145 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241699g00006 1218 Gene3D Transferase(Phosphotransferase) domain 1 952 1161 - -
Stsc241699g00006 1218 Pfam FAD binding domain 85 221 IPR006094 GO:0050660
Stsc241699g00006 1218 SMART serkin_6 878 1158 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241699g00006 1218 ProSiteProfiles PCMH-type FAD-binding domain profile. 81 255 IPR016166 GO:0071949
Stsc241699g00006 1218 ProSiteProfiles Protein kinase domain profile. 878 1152 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241699g00006 1218 Gene3D Phosphorylase Kinase; domain 1 849 951 - -
Stsc241699g00006 1218 ProSitePatterns Serine/Threonine protein kinases active-site signature. 999 1011 IPR008271 GO:0004672|GO:0006468
Stsc241699g00006 1218 Gene3D - 258 470 - -
Stsc241699g00006 1218 FunFam Wall-associated receptor kinase 2 952 1172 - -
Stsc241699g00006 1218 Gene3D - 34 139 IPR016167 -
Stsc241699g00006 1218 FunFam Berberine bridge enzyme-like 15 33 139 - -
Stsc241699g00006 1218 PANTHER OS08G0158400 PROTEIN 35 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241699g00006 Stsc-Chr241699 24965 32179 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241699g00006 27 536 Miscellaneous Gene Families AT1G01980 56.923 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Stsc241699g00006 Pkinase 1.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241699g00006 - - gmx:100798794 797.734