Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241697g00011 ATGCCGTTGAGGAAAGACATGCTTAATGGAGACCCTGAGTCTCTTCACCAACCTTTGCTCTCTTCCCAAAGATCCTTAGTCAACTCCACTTCTCAGGTTGCCATCGTTGGCTCCAATGTCTCCCCAATTGAGAGCCTTGACTACGAGATCATTGAGAACGAGTTCTTCAAGCAGGATTGGAGGAGCAGAGGTGCCTCTCAGATATTCCAGTACATATGCATGAAGTGGCTCTTGTGCTTCCTCATTGGTTTCATCGTTAGCCTCATTGCGTTCTGCAACAATCTCGCTGTTGAGAATCTTGCTGGGATCAAGTTTGTTATCACTTCCAATATGATGTTGGAAAGGAGGTTTCTGTTGGCCTTTGCAGTCTTTTTCGCTTCGAATTTGGCTCTTACCATCTTTTCTGCTACAATCACGGCTTTGATAGCACCGGCAGCTACCGGTTCCGGTATACCTGAGGTGAAGGCTTACTTAAATGGTGTGGATGCACCTGGAATTTTTACTCTACGGACTCTCTTTGTTAAGATTATTGGGAGCATTACAGCAGTGTCATCATCTCTTCTTATTGGGAAAGCAGGGCCCATGGTCCATACCGGTGCGTGTGTGGCATCATTGTTGGGTCAGGGTGGGTCGAAGAGATATGGTTTAACATGGAAGTGGTTACGCTTTTTTAAGAATGATCGAGATCGACGAGATTTGGTAATGTGTGGATCAGCAGCTGGAATTGCTGCCGCCTTTCGTGCCCCAGTTGGTGGGGTGTTGTTTGCTCTTGAAGAGATGACATCTTGGTGGAGAAGTGCACTTCTGTGGAGAGCTTTCTTCACAACAGCAATAGTTGCAATCGTGCTTCGTGCTATGATTGATGTCTGTTTAAGTGGTAAATGTGGGTTATTTGGTAAAGGCGGACTGATAATGTTTGATGTGTATTCAGCAAGTATGTCATATCATTTAGCGGAAGTTCCTCTCGTGTTTATTCTTGGCGTTATAGGAGGGATTCTTGGAAGCTTATATAACTTTATGCTGAACAAAGTTCTTCGCATATACAATTTTATCAATGAGAAAGGCACCATATGCAAAATTGCGCTTGCTTGTGTAATCTCCATTTTTACCTCCTTTCTTCTTTTCGGATTGCCATGGTTTGCATCTTGCCAACGTTGTCCACCTGATGCAACAGAGCCTTGTCCAACAATAGGCCGATCTGGCAACTTCAAGAAATTCCAATGCCCTCCTGATCACTACAATGATCTTGCCAGCCTCATTTTCAACACAAATGATGATGCTATCAGAAATCTATTTAGCAGAGACACTAACGATGAGTTTCAGTATTCGTCGATGTTCATCTTTTTCATCACATGCTTTTTCTTAAGTATCTTTAGCTATGGAGTTGTTGCTCCAGCTGGTCTTTTTGTGCCAGTTATTGTTACCGGTGCATCTTATGGACGCTTTGTTGGCATGTTGGTTGGCGAAAAGACCAATCTTCACCATGGCCTTTATGCTGTACTTGGTGCTGCTTCTTTTCTCGGTGGATCAATGAGGACAACGGTTTCTCTATGTGTAATTATGCTAGAACTGACCAATAACTTGTTATTGCTACCCTTGATCATGATGGTGCTTTTGGTATCAAAGACTGTAGCTGATGCTTTCAACGCAAACATATATGACCTTATTATGAAAGCCAAAGGTTTCCCTTATTTAGAAACTCATGCTGAACCGTATATGAGGCAGCTAACTGTAGGCGACGTAGTCACCGGACCACTTCAGATGTTTAATGGCATTGAGAAAGTCCGTAATATAGTGTTCATTCTCAAAAGTACAAGCCACAATGGGTTTCCTGTCATTGATGAACCTCCACTTTCTCAAGCACCGGTTTTATCAGGTTTAATCCTCCGCGACCATCTTGTCACTTTGTTAAAGAATAAAGTTTTTTCATCCACACCAAGGGTGATAGGGGATGATGTCTTTAAGAAGTTTACATCAGATGATTTTGCAAAGAAGGGTTCAAACAAAGGTGACAAGATAGAAGATATACACCTATCAGAGGAAGAGATGGAAATGTTTATAGATTTACATCCATTTACAAATACATCACCTTATACTGTTGTGGAGACAATGTCACTAGGAAAGGCCCTTACACTTTTTAGAGAAGTGGGTTTAAGGCACCTGCTAGTGATACCCAAGATCAGTGGTAGATCACCTGTAGTGGGTATACTAACGCGACACGACTTCATGCTGGAACATATATTAGGTGTGCATCCTTTGCTGGTAAGAAGCAGATGGAAAAGACTAAGGTTCCGGATCCCTTGTCTGGGAAATATCTTCTCTGGCATCTGA 2331 0.426 MPLRKDMLNGDPESLHQPLLSSQRSLVNSTSQVAIVGSNVSPIESLDYEIIENEFFKQDWRSRGASQIFQYICMKWLLCFLIGFIVSLIAFCNNLAVENLAGIKFVITSNMMLERRFLLAFAVFFASNLALTIFSATITALIAPAATGSGIPEVKAYLNGVDAPGIFTLRTLFVKIIGSITAVSSSLLIGKAGPMVHTGACVASLLGQGGSKRYGLTWKWLRFFKNDRDRRDLVMCGSAAGIAAAFRAPVGGVLFALEEMTSWWRSALLWRAFFTTAIVAIVLRAMIDVCLSGKCGLFGKGGLIMFDVYSASMSYHLAEVPLVFILGVIGGILGSLYNFMLNKVLRIYNFINEKGTICKIALACVISIFTSFLLFGLPWFASCQRCPPDATEPCPTIGRSGNFKKFQCPPDHYNDLASLIFNTNDDAIRNLFSRDTNDEFQYSSMFIFFITCFFLSIFSYGVVAPAGLFVPVIVTGASYGRFVGMLVGEKTNLHHGLYAVLGAASFLGGSMRTTVSLCVIMLELTNNLLLLPLIMMVLLVSKTVADAFNANIYDLIMKAKGFPYLETHAEPYMRQLTVGDVVTGPLQMFNGIEKVRNIVFILKSTSHNGFPVIDEPPLSQAPVLSGLILRDHLVTLLKNKVFSSTPRVIGDDVFKKFTSDDFAKKGSNKGDKIEDIHLSEEEMEMFIDLHPFTNTSPYTVVETMSLGKALTLFREVGLRHLLVIPKISGRSPVVGILTRHDFMLEHILGVHPLLVRSRWKRLRFRIPCLGNIFSGI 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241697g00011 776 Gene3D Clc chloride channel 67 565 - -
Stsc241697g00011 776 SUPERFAMILY Clc chloride channel 53 567 IPR014743 -
Stsc241697g00011 776 Pfam Voltage gated chloride channel 133 546 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc241697g00011 776 SUPERFAMILY CBS-domain pair 568 743 IPR046342 -
Stsc241697g00011 776 PRINTS Chloride channel signature 175 194 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc241697g00011 776 PRINTS Chloride channel signature 144 161 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc241697g00011 776 PRINTS Chloride channel signature 514 533 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc241697g00011 776 PRINTS Chloride channel signature 464 484 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc241697g00011 776 PRINTS Chloride channel signature 239 258 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc241697g00011 776 PRINTS Chloride channel signature 496 512 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc241697g00011 776 PRINTS Chloride channel signature 552 566 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc241697g00011 776 ProSiteProfiles CBS domain profile. 693 753 IPR000644 -
Stsc241697g00011 776 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 23 749 - -
Stsc241697g00011 776 Pfam CBS domain 694 743 IPR000644 -
Stsc241697g00011 776 PRINTS Plant CLC chloride channel signature 260 268 IPR002251 GO:0005247|GO:0006821|GO:0016020
Stsc241697g00011 776 PRINTS Plant CLC chloride channel signature 416 432 IPR002251 GO:0005247|GO:0006821|GO:0016020
Stsc241697g00011 776 PRINTS Plant CLC chloride channel signature 292 299 IPR002251 GO:0005247|GO:0006821|GO:0016020
Stsc241697g00011 776 PRINTS Plant CLC chloride channel signature 49 57 IPR002251 GO:0005247|GO:0006821|GO:0016020
Stsc241697g00011 776 PRINTS Plant CLC chloride channel signature 274 284 IPR002251 GO:0005247|GO:0006821|GO:0016020
Stsc241697g00011 776 FunFam Chloride channel ClC3 67 386 - -
Stsc241697g00011 776 CDD CBS_pair_voltage-gated_CLC_euk_bac 568 745 - -
Stsc241697g00011 776 Gene3D - 566 746 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241697g00011 Stsc-Chr241697 62484 66394 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241697g00011 13 767 Ion Channels AT5G33280 75.894 0.0 1155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241697g00011 K05016 - gmx:100817901 1231.47