Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241697g00010 ATGGCCATCTCTGCATTGTTGTTGGTACTGTTACTCCAATTGTCAACAATTTTTGGCTCAGCAGTTACCTTGAGACCAAAGGATTGTGGTACTGATTGGGTAGCTCATTCATATTCTAGTGATGGTGAAGAACTATTTTACATAAATGGGAATGTAGTTAACAAAGTTGCTTTCTGTGAGGCCCTCCAATTGTACATTGCAAACGGTTGCGATTTGAAGGACTACTTTGGAAGTAACAACTGTGCAATAGATGTCTCCTTTGTTAACTTACCTTCGACATCAGGAAGGAAACTTCTGCAGAAAGATTCGAGCAGTAAATCCGAATCACAAGTGGTTTCTCCCAAAGTTGGCCTTTTTGCTGGTGGAGCATTGTTGGTATGCTGTGCTGTTCTTTGTCCATGTATTTATGGGAAGAAGCGAAAAGCAACTGCTCATGCTGTTTTGACCAAGGACCCAAATTCGATATTGGACTCAGCTTCCTCCTTCGAAGCAAATTCTGTCCCGGAAAAGGTCCAAGTTCCAGCCAGTCCACTTCGAGTGCCACCTAGTCCTTCAAGATTCTCAACGTCTCCTAAACTCAAAAGAATTGAATCATTACATCTCAACCTCAATCAGATTGCAAGAGCTACCCGTAACTTCTCAGAAACATTGCAGATAGGAGAAGGAGGTTTTGGAACTGTCTACAAGGCTCAGTTAGAAGATGGACACGTGGTGGCTGTAAAACGCGCAAAAAGGGAACATTTTGAGAGCTTGAGAACTGAATTCAGCAGTGAAGTTGAACTTCTGGCAAAAATTGATCATCGAAACCTTGTGAAGCTACTAGGTTATATTGAGAAAGGACATGAACGCCTTCTTATTACAGAGTATGTGCCGAATGGTACTCTACGAGAACACCTAGACGGTCAACGTGGAAAAATCCTAGACTTCAATCAGCGCCTAGAAATCGCTATTGATGTTGCTCATGGCTTGACCTATTTGCATCTGTATGCAGAGAAGCCAATTATCCATCGAGATGTGAAGTCATCCAACATTCTTCTAACAGAAAGCATGCGAGCTAAAGTTGCTGATTTTGGATTTGCAAGGATTGGCCCTATGAACTCTGATCAAACACACATTTCTACCAAAGTGAAGGGAACAGTTGGTTATTTGGATCCTGAGTATATGAAAACATACCAACTCACTACCAAGAGTGATGTTTACTCATTTGGAATTTTGCTTTTAGAAATTTTAACAGGCCGTCGTCCTGTGGAGTTGAGGAAAACTGTTGAAGAGAGGGTTACACTCAGATGGGCTTTCAGGAAGTTCAATGAAGGAAGGGTGGTGGAGCTGGTGGATCCGTTAATGGAAGAAACTGTAAATTCTGATGTTCTGATGAAGATGTTTGATTTGGCATTTCAGTGTGCAGCACCGGTCCGGGCAGATAGACCTGACATGAAAGCAGTGGGAGAGCAGTTGTGGTCAATTAGGGCAGATTACTTTAAGAATTCAAGAAGTAATTAG 1500 0.4207 MAISALLLVLLLQLSTIFGSAVTLRPKDCGTDWVAHSYSSDGEELFYINGNVVNKVAFCEALQLYIANGCDLKDYFGSNNCAIDVSFVNLPSTSGRKLLQKDSSSKSESQVVSPKVGLFAGGALLVCCAVLCPCIYGKKRKATAHAVLTKDPNSILDSASSFEANSVPEKVQVPASPLRVPPSPSRFSTSPKLKRIESLHLNLNQIARATRNFSETLQIGEGGFGTVYKAQLEDGHVVAVKRAKREHFESLRTEFSSEVELLAKIDHRNLVKLLGYIEKGHERLLITEYVPNGTLREHLDGQRGKILDFNQRLEIAIDVAHGLTYLHLYAEKPIIHRDVKSSNILLTESMRAKVADFGFARIGPMNSDQTHISTKVKGTVGYLDPEYMKTYQLTTKSDVYSFGILLLEILTGRRPVELRKTVEERVTLRWAFRKFNEGRVVELVDPLMEETVNSDVLMKMFDLAFQCAAPVRADRPDMKAVGEQLWSIRADYFKNSRSN 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241697g00010 499 SUPERFAMILY Protein kinase-like (PK-like) 197 488 IPR011009 -
Stsc241697g00010 499 ProSitePatterns Serine/Threonine protein kinases active-site signature. 334 346 IPR008271 GO:0004672|GO:0006468
Stsc241697g00010 499 Pfam Protein tyrosine and serine/threonine kinase 218 485 IPR001245 GO:0004672|GO:0006468
Stsc241697g00010 499 ProSiteProfiles Protein kinase domain profile. 213 493 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241697g00010 499 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 185 289 - -
Stsc241697g00010 499 Gene3D Transferase(Phosphotransferase) domain 1 290 498 - -
Stsc241697g00010 499 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 86 490 - -
Stsc241697g00010 499 CDD STKc_IRAK 219 485 - -
Stsc241697g00010 499 ProSitePatterns Protein kinases ATP-binding region signature. 219 241 IPR017441 GO:0005524
Stsc241697g00010 499 Gene3D Phosphorylase Kinase; domain 1 184 289 - -
Stsc241697g00010 499 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 290 499 - -
Stsc241697g00010 499 SMART serkin_6 213 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241697g00010 Stsc-Chr241697 59020 62369 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241697g00010 198 488 Receptor kinase-like Gene Family AT5G59700 45.704 9.22e-76 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Stsc241697g00010 PK_Tyr_Ser-Thr 1.8e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241697g00010 - - gmx:100798260 797.734