Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241696g00040 ATGGCTGGGGTTGATGAAAATGTTGGGAAATGGAGTGGTCCTAGCCCGAGTCCCAGAACGTTTTTCTCAAGAATGTTAGGGGAAGATAATAATGGAAATGGAGCAGAAGAAGAAGAAGATGGTGAGAAGATGGTGTCACGTGGTGGTCTTGTTGAGAGGATGGCTGCTAGAGCTGGCTTCAATGCACCCAGGTTGAACACTGACACCATTAGATCTACTGACCTTTCACTCAATTCTGATGTTCCTTCTCCTTACTTCACCATTCCACCTGGTCTCAGTCCTACCACGCTTTTAGATTCTCCTGTCTTCCTTGCTAATTCACTCGCACAGCCATCTCCAACAACGGGAAAGTTTCCATTCATCTCAAACGCCAACGTCCGCTTCCCAGAATTATCATCCGATGCTCCTGAAAGATGTAAAGACAACAACAGCTTTGATGATATCTATGCATCATCCTTTGCTTTCAAGCCTGCAACAGATTCAGGCTCCTCTTTTTATCAAGGCCCTGCCAGAAAAATGAATCCAACTACAATAGCTCAACAATCTCTTCCTGGTGTTGAGGTCTCTGTTCAGTCAGAAAATTCTTTTCAATCGCAAGGTGCTGATGCAGTAAAATCTCAAACTGAGAATAAAACTTTATCAGGTGATCAAAGGGCTTTTGATACCGTTGGTGGTAGCATTGAACATTCCCCACAACTTGAAGAGCAAGCAGATGAAGAGGGAGAGCAAAGAGGGAATGGAGACTCAATGGCTGCTGGTGGCGGTGCACCATCTGAAGATGGATATAACTGGAGAAAATATGGGCAGAAGCAAGTTAAGGGTAGCGAGTACCCACGAAGTTACTACAAGTGTACACATCCAAATTGTCCTGTGAAAAAGAAAGTAGAACGATCTCATGAAGGCCACATAACAGAGATCATCTATAAGGGAGCACACAACCATCCTAAACCTCCCCCAAATCGCCGCTCAGGCATAGCTTCAGCTAACCCTCCAAGTGACATGCAAATGGACAATCCGGAGCATGTTGAACGACAAAGTGGCAGTGATGGAGAGCTGGGCTGGGCTAATTTACAGAAGGGGAATGTAGCCGGAGCTGCTAATTGGAAGAATGAGAACCTAGAGGTTACATCATCAGCATCTGTTGCCCCTGAGTATTGCAACCAGTCCACCAATTCACAGGCTCAAAATGGTGCTCAGTTTGATTCGGGAGATGCTGTGGATGCCTCTTCTACTTTTTCCAATGAAGATGATGATGATGATCGAGGTACTCATGGTAGTGTATCATTAGGTTATGATGGGGAAGGAGATGAATCAGAATCGAAAAGAAGGAAACTGGAATCATATGCAACAGAGTTGAGTGGAGCTACTAGAGCTATTCGGGAACCTAGAGTTGTTGTACAAACTACCAGCGAAGTAGACATCCTTGATGATGGTTATCGGTGGAGGAAATATGGGCAGAAGGTGGTCAAAGGAAATCCCAACCCGAGGAGTTACTACAAGTGCACGAATGCAGGCTGCACTGTGAGGAAACACGTTGAGAGAGCATCACATGACCTTAAATCTGTCATCACTACATATGAGGGCAAGCACAACCATGATGTTCCTGCCGCGCGCTCTAGCAGTCATGTCAATGCTAATGCTTCTGGCAGTGGCAGTGTTCCCGGGCAAGCCCATGCTCACAGAGCTGAACCAACTCAAGTTCACAGTGGCATTGGAAGGCTTGAGAGGCCTGCCCCCCTCGGTGCATTCAACCTTCCGGGGAGGCAGCAGCTAGGACCTCCACATGGCTTCTCCTTTGGAATGAATCAACATTTTGTGCCCAACTTGGCGATGCCTGGATTTGGGCCCGGGCAAGCAAAGCTTCCTGTGATGCCTGTTCATCCCTTCTTGGCAACACAACAACAACAACAACGTCCTCCTCCTCCTCCTCCTACTAATGAGATGGGTTTCATGTTGCCAAAGGGTGAACCAAATGTGGAGTCTATTCCCCTGCCCAGTGGCTCCTACCAAGATATCATGAGTCGCATGCCTCTTGGACCTCACATGTGA 2049 0.4705 MAGVDENVGKWSGPSPSPRTFFSRMLGEDNNGNGAEEEEDGEKMVSRGGLVERMAARAGFNAPRLNTDTIRSTDLSLNSDVPSPYFTIPPGLSPTTLLDSPVFLANSLAQPSPTTGKFPFISNANVRFPELSSDAPERCKDNNSFDDIYASSFAFKPATDSGSSFYQGPARKMNPTTIAQQSLPGVEVSVQSENSFQSQGADAVKSQTENKTLSGDQRAFDTVGGSIEHSPQLEEQADEEGEQRGNGDSMAAGGGAPSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSHEGHITEIIYKGAHNHPKPPPNRRSGIASANPPSDMQMDNPEHVERQSGSDGELGWANLQKGNVAGAANWKNENLEVTSSASVAPEYCNQSTNSQAQNGAQFDSGDAVDASSTFSNEDDDDDRGTHGSVSLGYDGEGDESESKRRKLESYATELSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARSSSHVNANASGSGSVPGQAHAHRAEPTQVHSGIGRLERPAPLGAFNLPGRQQLGPPHGFSFGMNQHFVPNLAMPGFGPGQAKLPVMPVHPFLATQQQQQRPPPPPPTNEMGFMLPKGEPNVESIPLPSGSYQDIMSRMPLGPHM 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241696g00040 682 SMART WRKY_cls 475 534 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc241696g00040 682 SMART WRKY_cls 258 316 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc241696g00040 682 MobiDBLite consensus disorder prediction 13 27 - -
Stsc241696g00040 682 MobiDBLite consensus disorder prediction 184 219 - -
Stsc241696g00040 682 FunFam WRKY transcription factor 33 462 528 - -
Stsc241696g00040 682 Pfam WRKY DNA -binding domain 476 532 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc241696g00040 682 Pfam WRKY DNA -binding domain 259 315 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc241696g00040 682 ProSiteProfiles WRKY domain profile. 259 317 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc241696g00040 682 ProSiteProfiles WRKY domain profile. 470 535 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc241696g00040 682 FunFam WRKY transcription factor 248 318 - -
Stsc241696g00040 682 MobiDBLite consensus disorder prediction 307 355 - -
Stsc241696g00040 682 MobiDBLite consensus disorder prediction 631 657 - -
Stsc241696g00040 682 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 98 553 IPR044810 GO:0003700
Stsc241696g00040 682 SUPERFAMILY WRKY DNA-binding domain 467 535 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc241696g00040 682 MobiDBLite consensus disorder prediction 387 410 - -
Stsc241696g00040 682 MobiDBLite consensus disorder prediction 387 449 - -
Stsc241696g00040 682 MobiDBLite consensus disorder prediction 532 569 - -
Stsc241696g00040 682 MobiDBLite consensus disorder prediction 184 264 - -
Stsc241696g00040 682 Gene3D WRKY domain 462 528 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc241696g00040 682 MobiDBLite consensus disorder prediction 1 45 - -
Stsc241696g00040 682 MobiDBLite consensus disorder prediction 434 448 - -
Stsc241696g00040 682 MobiDBLite consensus disorder prediction 537 553 - -
Stsc241696g00040 682 Gene3D WRKY domain 252 318 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc241696g00040 682 SUPERFAMILY WRKY DNA-binding domain 257 317 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241696g00040 Stsc-Chr241696 146545 149970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241696g00040 1 677 WRKY Transcription Factor Family AT5G56270 52.446 0.0 571
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc241696g00040 WRKY 3.4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241696g00040 K18835 - gmx:100127395 1026.93