Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241696g00034 ATGGCAAGTTGTTCAGCTGTGTGCGAGCAAGAGAGTGAGAGTGAGAGACAGACACCAAATGGAAATGGAAATGGGAAATCATCCCCCAAAAGTTATCCAGCAGCAACAGCTCTGTACCAAGACCTTGCTTCTGATCCCAACCTCTTCCGGGATAACCTTCAATCTTTTCATAAATCATTCGGCACTCAATTTAAGGTTCCCACCATAGGAGGAAGGCCACTAGATTTATATCGCCTTTTCATGGAAGTAACATCTCGTGGTGGTCTTGAAAAGGTAATTGTAGAACGCAAATGGAAGGATGTGATTCTCGGCTTCAAGTTTCGAGAGACTATTACAAGCGCATCATTTATGGTGCGCAGATACTATCTATCATTGCTTTATCACTTTGAGCAAGCCTATTACTTTCGCAAGCAAGTCCCTCCTTCCTCAACACCTGATCCTGCAAATACGAGTCTCGTAGATAGCTCCACACCCTTTGGTGAAGCCAGTACAGCCCAGCAGCTTGGTTCTGTGGTTCCTGGAACAATTGATGGGAAGTTTGATGGTGGCTATATAGTTACAGTGAATCTGGATTCTGAACAAGTGAAAGGTATTTTGTACCATGTTCCCATCAGTTTGTCCCAGAGCTCTAATACTGTTGCCATCCATGGTTCACGTAATCAAAAGAAATCTAAATTGGCATTACGTGATCCATCTCGGCCAAAGTCAAACAGGAGTGGCTACAATTTCTTCTTTGCTGAGAACTATGCCAGGTTGAGACCCTTATTCCATGGTCAAGAGAGAGCGATTAGTAAGAGGATTGGGCTTCTATGGAACAATCTAACAGAAGCAGAAAGACAGGTTTATCAGCAGAAAGGGCTGAGAGACAAGGAGAGATACAAGACCGAAATGTTGGAGTACAAGTCATCCAATAATTCAGGTCCTCAATAG 930 0.4355 MASCSAVCEQESESERQTPNGNGNGKSSPKSYPAATALYQDLASDPNLFRDNLQSFHKSFGTQFKVPTIGGRPLDLYRLFMEVTSRGGLEKVIVERKWKDVILGFKFRETITSASFMVRRYYLSLLYHFEQAYYFRKQVPPSSTPDPANTSLVDSSTPFGEASTAQQLGSVVPGTIDGKFDGGYIVTVNLDSEQVKGILYHVPISLSQSSNTVAIHGSRNQKKSKLALRDPSRPKSNRSGYNFFFAENYARLRPLFHGQERAISKRIGLLWNNLTEAERQVYQQKGLRDKERYKTEMLEYKSSNNSGPQ 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241696g00034 309 SUPERFAMILY ARID-like 42 143 IPR036431 GO:0003677
Stsc241696g00034 309 SMART ARID_2 40 130 - -
Stsc241696g00034 309 SMART hmgende2 233 302 IPR009071 -
Stsc241696g00034 309 MobiDBLite consensus disorder prediction 1 31 - -
Stsc241696g00034 309 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 234 301 IPR009071 -
Stsc241696g00034 309 SUPERFAMILY HMG-box 221 305 IPR036910 -
Stsc241696g00034 309 Gene3D - 36 145 IPR036431 GO:0003677
Stsc241696g00034 309 CDD ARID_HMGB9-like 45 130 IPR045303 GO:0003677
Stsc241696g00034 309 Gene3D High mobility group box domain 217 308 IPR036910 -
Stsc241696g00034 309 ProSiteProfiles ARID domain profile. 43 134 IPR001606 GO:0003677
Stsc241696g00034 309 CDD HMG-box_AtHMGB9-like 234 300 - -
Stsc241696g00034 309 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 14 306 - -
Stsc241696g00034 309 Pfam ARID/BRIGHT DNA binding domain 48 130 IPR001606 GO:0003677
Stsc241696g00034 309 SMART bright_3 44 135 IPR001606 GO:0003677
Stsc241696g00034 309 Pfam HMG (high mobility group) box 234 301 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241696g00034 Stsc-Chr241696 105953 108067 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241696g00034 12 307 ARID Transcription Factor Family AT3G13350 50.820 7.81e-100 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Stsc241696g00034 ARID 1.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241696g00034 - - adu:107491521 520.776