Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241696g00032 ATGTCGATGGTGCTGAGGAGGGTGTGGGAACTGGTGTCGAGATCGAACAGTGATGGAAGGGCATCAGAAGAGGTGTCACAGTCGTCGTCATCATCATCATCAAGGTCCGATATGGGTGAGCTGGAGAAGCTGCCAGGAGACATAGTGATACAGATAATTAGGGCGGTGGGGCCAAAGGAAGCAGCCAAATTGAGCTGCGTATGCAACACTCTGAGATGCCTCCTTCTCGACAACCGCTTGTGGATTCACTTCCTTCAGACGTATCAGGCCCATCCTTCTTGGGACTCTCTCTTCTTTGCTGAGACCACCTTGACCTATGGCTACCCTCTTCCTCTTCCCAGACCCTTCCATGCCTACACCCCCCAACTCTCCTTCAAGCATATTTATGGCCAACGAGCTCGCGTTCCTGGTTCTGTTATCATTGATGGCGGTTCTGGCTATTGCAAATTCGGTTGGAGCAAATATGGCTGTCCATCGGGCCGCTCAGCAACCTTTTTGGAATTCGGTAACATAGAGTCCCCAATGTATACTAGGCTACGCCATTTTTTTGCAACTATATATAACAGGATGCAGGTCAAACCAAATACACAACCTGTTATTGTTTCTGTACCAATATGTCATTATGATGATACTGAATCAGCCAAAGCATCACGACGGCAGCTTAAGGAAGCAATCTATTCTGCCCTCTTCGACATGAATGTTCCCGCTGTTTGTGCTGTCAACCAGGCAACTCTAGCTCTGTTTGCTGCGAAGCGTACTTCTGGAATAGCTGTTAATATAGGGTTTCAAGTCACATCAGTAGTTCCAATTTTTAATGGTAAAGTGATGCGCAGTGTGGGCGTGGAAGTTGTGGGACTGGGAGCACTAAAACTTACAGGATTTCTGAGGGAGAAGATGCAACTCAACAACCTAAATTTTCAGTCTTTATACACTGTCCGAACATTGAAAGAGAAGTTGTGCTATGTTGCTCTTGATTATGAAGCTGAGCTATCAAAAGATACACAAGCATCATTTGAAGCTGTTGGAGAAGGACGGTTTACCCTTTCAAAAGAGCGGTTTCAAACTGGAGAGATCTTATTCCAGCCGCATCTTGCTGGAGTGCAAGCGATGGGTTTGCACCAGGCCATAGCCCTTTGCATGGAGCATTGCCATTCTGCAGAATTAGCAGGTGACAGTGATTGGTACAAGACTGTAGTTTTATCAGGGGGTTCTGCATGCTTACCAGGTTTGGCAGAAAGGTTAGAGAAGGAACTCAAGGCCTTACTTCCTCCATACATATCCAATGGAACCAGAGTCATACCTCCTCCATACGGTGCCGATACTCCTTGGTTTGGAGCTAAGATTATTGGCAATCTGAGCACATTTCCTGGTCCATGGTGCGTGACAAAGAAGCAGTTCCGTCAGAAGCCGAGACTCAACCTCATTTGGTGA 1431 0.4682 MSMVLRRVWELVSRSNSDGRASEEVSQSSSSSSSRSDMGELEKLPGDIVIQIIRAVGPKEAAKLSCVCNTLRCLLLDNRLWIHFLQTYQAHPSWDSLFFAETTLTYGYPLPLPRPFHAYTPQLSFKHIYGQRARVPGSVIIDGGSGYCKFGWSKYGCPSGRSATFLEFGNIESPMYTRLRHFFATIYNRMQVKPNTQPVIVSVPICHYDDTESAKASRRQLKEAIYSALFDMNVPAVCAVNQATLALFAAKRTSGIAVNIGFQVTSVVPIFNGKVMRSVGVEVVGLGALKLTGFLREKMQLNNLNFQSLYTVRTLKEKLCYVALDYEAELSKDTQASFEAVGEGRFTLSKERFQTGEILFQPHLAGVQAMGLHQAIALCMEHCHSAELAGDSDWYKTVVLSGGSACLPGLAERLEKELKALLPPYISNGTRVIPPPYGADTPWFGAKIIGNLSTFPGPWCVTKKQFRQKPRLNLIW 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241696g00032 476 CDD NBD_sugar-kinase_HSP70_actin 139 289 - -
Stsc241696g00032 476 ProSiteProfiles F-box domain profile. 38 84 IPR001810 GO:0005515
Stsc241696g00032 476 Gene3D - 243 441 - -
Stsc241696g00032 476 Gene3D Actin; Chain A, domain 4 286 369 - -
Stsc241696g00032 476 Gene3D - 179 468 - -
Stsc241696g00032 476 SMART fbox_2 44 84 IPR001810 GO:0005515
Stsc241696g00032 476 MobiDBLite consensus disorder prediction 15 39 - -
Stsc241696g00032 476 PANTHER ACTIN 180 468 IPR004000 -
Stsc241696g00032 476 SUPERFAMILY Actin-like ATPase domain 138 258 IPR043129 -
Stsc241696g00032 476 Pfam Actin 185 466 IPR004000 -
Stsc241696g00032 476 SMART actin_3 136 466 IPR004000 -
Stsc241696g00032 476 SUPERFAMILY Actin-like ATPase domain 252 467 IPR043129 -
Stsc241696g00032 476 SUPERFAMILY F-box domain 27 101 IPR036047 GO:0005515
Stsc241696g00032 476 Gene3D - 24 108 - -
Stsc241696g00032 476 MobiDBLite consensus disorder prediction 15 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241696g00032 Stsc-Chr241696 99936 103435 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241696g00032 185 468 Cytoskeleton Gene Families AT3G12110 32.082 5.38e-41 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241696g00032 K16616 - gmx:100791973 788.489