Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241696g00012 ATGGAGGGTCCTGCTCCTCCTGCGAATGATATGTGCTCGGTGTGCCATGGCAACTTCAACACTCCATGTCAATCCAATTGCTCCCACTGGTTCTGTGCCAACTGCATCATGCTCGTGTGGCACCACGGATCCGCCGTGCAGCCCTGCAAGTGCCCCCTCTGCCGACGTCCCATCACTCTCCTCGTCCCCACCGACGACTCCCTCAGCCACCGCCACGACCCCGAGGTTGCTAACGCTCTTGACAAGATCCAGAGATACAATAGGTTGTTCGGAGAGCGTGAGGGCGGCCTTCTCCAGAGATTGCAAGATCTTCCATTCCTCCTGCGTCGCCTCCTTCGGGACTTCTCCGATCCTCGCAGATCCCTTCCTCTTGTCATTCGAGCTCGCGTCTACATTGCTATGATACTTAGTGTTGTGTACATCATCAGCCCTATAGACATCATTCCAGAAGGGATACTAGGAATAGTTGGACTCTTGGATGATCTGCTCATTGTGCTCATCTGTTTCCTACACGTTGCTGCCCTTTATAGATCAGTACTCTATCTCCGCCACGGTGGTTCCTGA 564 0.539 MEGPAPPANDMCSVCHGNFNTPCQSNCSHWFCANCIMLVWHHGSAVQPCKCPLCRRPITLLVPTDDSLSHRHDPEVANALDKIQRYNRLFGEREGGLLQRLQDLPFLLRRLLRDFSDPRRSLPLVIRARVYIAMILSVVYIISPIDIIPEGILGIVGLLDDLLIVLICFLHVAALYRSVLYLRHGGS 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241696g00012 187 ProSitePatterns Zinc finger RING-type signature. 27 36 IPR017907 -
Stsc241696g00012 187 Pfam Protein of unknown function (DUF1232) 132 166 IPR010652 -
Stsc241696g00012 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 103 IPR013083 -
Stsc241696g00012 187 PANTHER UNCHARACTERIZED 5 184 IPR038896 GO:0061630
Stsc241696g00012 187 SMART ring_2 12 54 IPR001841 -
Stsc241696g00012 187 ProSiteProfiles Zinc finger RING-type profile. 12 55 IPR001841 -
Stsc241696g00012 187 Pfam Zinc finger, C3HC4 type (RING finger) 9 59 - -
Stsc241696g00012 187 SUPERFAMILY RING/U-box 10 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241696g00012 Stsc-Chr241696 41551 42913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241696g00012 37 187 C3H Transcription Factor Family AT1G72175 74.172 1.73e-66 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241696g00012 K15707 - jre:109000985 257.299