Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241695g00004 ATGGCTGGTGAAGGAGACAAAAAAAGAAATGACTTCTATGCAGTTCTGGGATTGAACAAAGAGTGCACTGATTCAGAGCTAAGGAATGCATATAAGAAACTAGCACTGAAATGGCACCCTGATCGTTGTTCAGCTTCGGGGAATTCGAAGTTCGTGGAAGAATCTAAGAAGAAATTCCAAGCAATCCAGCAAGCCTATTCTGTTTTATCTGACGCCAACAAAAGGCTAATGTACGACGTAGGAGTCTACGACAGTGATGACGACGAAATCGGCATGGGGGACTTCTTGAACGAAATGGTAACAATGATGAGCCAAACAAAATCAAATGAAAATGGAGAGGAGAGCTTTGAAGAGCTGCAACAGCTATTTGAAGATATGTTTCAAGAAGATATTGGATCAGATAGAAGCACCACTTTTACTGCTGCCGGTTGCTCCTCTTCCTCGGCACGCATGGCTTATAGCGGAAATTCCAACTCGAATAAGCGCAATTCAGCTGACATGAATTTTTTGAAGGCAGAGAATTCCTTTGACTTTGATACCAGTTACCAGAGCTTCTGCTTAGGGACAGGTGAAGCACCTCCAAGATGTAAGGAGGGAAAAGCGAAAAGCGCTTCACGGCGGAGGAGGTAG 630 0.4397 MAGEGDKKRNDFYAVLGLNKECTDSELRNAYKKLALKWHPDRCSASGNSKFVEESKKKFQAIQQAYSVLSDANKRLMYDVGVYDSDDDEIGMGDFLNEMVTMMSQTKSNENGEESFEELQQLFEDMFQEDIGSDRSTTFTAAGCSSSSARMAYSGNSNSNKRNSADMNFLKAENSFDFDTSYQSFCLGTGEAPPRCKEGKAKSASRRRR 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241695g00004 209 SMART dnaj_3 10 74 IPR001623 -
Stsc241695g00004 209 Pfam DnaJ domain 11 79 IPR001623 -
Stsc241695g00004 209 PRINTS DnaJ domain signature 13 31 IPR001623 -
Stsc241695g00004 209 PRINTS DnaJ domain signature 31 46 IPR001623 -
Stsc241695g00004 209 PRINTS DnaJ domain signature 54 74 IPR001623 -
Stsc241695g00004 209 ProSitePatterns Nt-dnaJ domain signature. 59 78 IPR018253 -
Stsc241695g00004 209 MobiDBLite consensus disorder prediction 188 209 - -
Stsc241695g00004 209 SUPERFAMILY Chaperone J-domain 8 94 IPR036869 -
Stsc241695g00004 209 PANTHER PUTATIVE, EXPRESSED-RELATED 1 178 - -
Stsc241695g00004 209 CDD DnaJ 11 71 IPR001623 -
Stsc241695g00004 209 ProSiteProfiles dnaJ domain profile. 11 82 IPR001623 -
Stsc241695g00004 209 Gene3D DnaJ domain 8 139 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241695g00004 Stsc-Chr241695 32800 37323 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241695g00004 12 79 C2H2 Transcription Factor Family AT1G74250 43.478 7.51e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241695g00004 - - lja:Lj3g3v2576120.1 317.39