Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241694g00020 ATGCAAGGACAACATATCTCCACTGAGCTGATTCAAGCAATTGAAGGATCTCAGGTTTTGATTGCCATCTTCTCTAAGAACTATGCTAACTCTTCATGGTGCTTGCAGGAACTTGCTAAGATGCTAGATTGCAGCACTAAGGTAGCAACACCAATTTTACTGCCTATTTTCTATGATGTGAGTCCGTCCGAGGTTCGTAAACAAAGGGAAGTCTATGGGAAAGCATTGGTTGAACATGAAGAAAGATTCAAACATGACTCGGAGATGGTGCAACAATGGAGGGAAGCTCTTGTGCAAGTGGCCAATCTTTCTGGTTGGGATATACAAAATAAGCAGGAGAGTGTAGAGATTGAGAAAATTGTTAAAAGGGCTAGAAGCATATTAAGTTCGAACTCATTAAGTGTGGATGGGTTGGTTGGGATGCAATCTCGTGTAGAAGAATTGGAAAACCTTATTGATTTCAACTCTAATAGGGAAGAAGTTCGGGTTGTAGGCATATGTGGGATGGGCGGGATAGGAAAGTCAACGCTTGCTAAAGTGATATACGGTAGAAGCCTTCATCAGTACAGTGCTCGTTGTTTTGTTGATGATATAAGCAAAGTTTTTCGTGAGGATGGTTTGCTTTCTCTACAAAAGCAGTTTATTCATCAAATTACAAACGGAGAGATCTCAGAAATATTCAATCATTATGAGGCTAATCGTTTGATAAGAACTACATTACGCCATCAAAAGTCTCTTATTTTTCTAGATAATGCTGATGAAGTTGGACAATTACAGAAATTGGGTCTGACTCGTGATTGTCTTTGCCCGGGAAGTAGAGTTATAGTAATTTCAAGAGATCGACATGTCTTGAAATCTTTCGAACCAGATGAAATATACGATGCTCAACTCTTGAACGAGGATGAATCTCATGAATTGTTTTGTAGAAAGGCCTTCAAAGAAAATACAATTATGAGTTGTGATGACATTAGCAAAGAGTATAGAGACTTGACAGATCTTGTCCTAGAATATGCTCAGGGTCTTCCTTTGGCAATTGAAATTTTGGGGTCATTTCTACGCCATCGTGATATCTCTGAATGGAGAAGTGCCTTGGCCAGACTCAGAAATAATCCAAAGAAAGAAATTGTAGATATATTTCAAATGAGTTTTGATGCATTAGATTCCCTCGAAAAAGAAATATTTTTGGATATTGCTTGTTTCTTTAACCACGGATACAAGTATAATGTGCCAAAACTTTTAGACTATCGTGGTTTTCATCCAAATATTGGATTAAGTGTCCTTATTGATAAATCATTAATAACCTTTGAATATGAGGACGGAGTTAGGATGCATGACCTGCTGCAAGAGTTCGGCAGGAGCATAGTTCGACAAAGTGCACCAAATGAGCCATGGAAGTGGAGCAGAATATGGAGCGCAAAGGATTTGCAAAGAATTATGTTTGAAGATATGGTAATGGATGACGTTAAAGCCATAAGATTGAGGAGAGAGTACATTTCTGGTAAAACAAGAAATACAACATCAACTGGTGAAATATTATCAAGAATGAGACGACTTGAATTTCTCATAATAGAGGATGGCAGTTTTTCTGGAAGCCTTAATAGTATGTCTAATGAATTGCGATATTTTGAATGGGAATTTTATCCATTTACATATTTTCCCTCAAGTTGCAAACTATCCAAGCTTTTTGAATTGATCTTACCATTCAGCTACATTAAACAATTATGGGAAGGCACAATGGTATGA 1743 0.3758 MQGQHISTELIQAIEGSQVLIAIFSKNYANSSWCLQELAKMLDCSTKVATPILLPIFYDVSPSEVRKQREVYGKALVEHEERFKHDSEMVQQWREALVQVANLSGWDIQNKQESVEIEKIVKRARSILSSNSLSVDGLVGMQSRVEELENLIDFNSNREEVRVVGICGMGGIGKSTLAKVIYGRSLHQYSARCFVDDISKVFREDGLLSLQKQFIHQITNGEISEIFNHYEANRLIRTTLRHQKSLIFLDNADEVGQLQKLGLTRDCLCPGSRVIVISRDRHVLKSFEPDEIYDAQLLNEDESHELFCRKAFKENTIMSCDDISKEYRDLTDLVLEYAQGLPLAIEILGSFLRHRDISEWRSALARLRNNPKKEIVDIFQMSFDALDSLEKEIFLDIACFFNHGYKYNVPKLLDYRGFHPNIGLSVLIDKSLITFEYEDGVRMHDLLQEFGRSIVRQSAPNEPWKWSRIWSAKDLQRIMFEDMVMDDVKAIRLRREYISGKTRNTTSTGEILSRMRRLEFLIIEDGSFSGSLNSMSNELRYFEWEFYPFTYFPSSCKLSKLFELILPFSYIKQLWEGTMV 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241694g00020 580 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 106 IPR035897 -
Stsc241694g00020 580 Pfam NB-ARC domain 148 386 IPR002182 GO:0043531
Stsc241694g00020 580 SUPERFAMILY "Winged helix" DNA-binding domain 374 476 IPR036390 -
Stsc241694g00020 580 Pfam TIR domain 2 124 IPR000157 GO:0007165
Stsc241694g00020 580 PRINTS Disease resistance protein signature 239 253 - -
Stsc241694g00020 580 PRINTS Disease resistance protein signature 338 352 - -
Stsc241694g00020 580 PRINTS Disease resistance protein signature 163 178 - -
Stsc241694g00020 580 ProSiteProfiles TIR domain profile. 1 128 IPR000157 GO:0007165
Stsc241694g00020 580 Gene3D - 1 133 IPR035897 -
Stsc241694g00020 580 Gene3D - 134 292 IPR027417 -
Stsc241694g00020 580 SMART till_3 1 103 IPR000157 GO:0007165
Stsc241694g00020 580 Gene3D - 297 387 IPR042197 -
Stsc241694g00020 580 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 2 574 IPR044974 GO:0006952
Stsc241694g00020 580 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 134 397 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241694g00020 Stsc-Chr241694 121435 125352 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241694g00020 11 577 WRKY Transcription Factor Family AT4G12020 28.671 3.28e-58 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241694g00020 - - ahf:112792657 825.469