Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241694g00019 ATGCAAGGACAACATATCTCCACTGAGCTGATTCAAGCAATTGAAGGATCTCAGGTTTTGATTGCCATCTTCTCTAAGAACTATGCTAACTCTTCATGGTGCTTGCAGGAACTTGCTAAGATGCTAGATTGCAGCACTAAGGTAGCAACACCAATTTTACTGCCTATTTTCTATGATGTGAGTCCGTCCGAGGTTCGTAAACAAAGGGAAGTCTATGGGAAAGCATTGGTTGAACATGAAGAAAGATTCAAACATGACTCGGAGATGGTGCAACAATGGAGGGAAGCTCTTGTGCAAGTGGCCAATCTTTCTGGTTGGGATATACAAAATAAGCAGGAGAGTGTAGAGATTGAGAAAATTGTTAAAAGGGCTAGAAGCATATTAAGTTCGAACTCATTAAGTGTGGATGGGTTGGTTGGGATGCAATCTCGTGTAGAAGAATTGGAAAACCTTATTGATTTCAACTCTAATAGGGAAGAAGTTCGGGTTGTAGGCATATGTGGGATGGGCGGGATAGGAAAGTCAACGCTTGCTAAAGTGATATACGGTAGAAGCCTTCATCAGTACAGTGCTCGTTGTTTTGTTGATGATATAAGCAAAGTTTTTCGTGAGGATGGTTTGCTTTCTCTACAAAAGCAGTTTATTCATCAAATTACAAACGGAGAGATCTCAGAAATATTCAATCATTATGAGGCTAATCGTTTGATAAGAACTACATTACGCCATCAAAAGTCTCTTATTTTTCTAGATAATGCTGATGAAGTTGGACAATTACAGAAATTGGGTCTGACTCGTGATTGTCTTTGCCCGGGAAGTAGAGTTATAGTAATTTCAAGAGATCGACATGTCTTGAAATCTTTCGAACCAGATGAAATATACGATGCTCAACTCTTGAACGAGGATGAATCTCATGAATTGTTTTGTAGAAAGGCCTTCAAAGAAAATACAATTATGAGTTGTGATGACATTAGCAAAGAGTATAGAGACTTGACAGATCTTGTCCTAGAATATGCTCAGGGTCTTCCTTTGGCAATTGAAATTTTGGGGTCATTTCTACGCCATCGTGATATCTCTGAATGGAGAAGTGCCTTGGCCAGACTCAGAAATAATCCAAAGAAAGAAATTGTAGATATATTTCAAATGAGTTTTGATGCATTAGATTCCCTCGAAAAAGAAATATTTTTGGATATTGCTTGTTTCTTTAACCACGGATACAAGTATAATGTGCCAAAACTTTTAGACTATCGTGGTTTTCATCCAAATATTGGATTAAGTGTCCTTATTGATAAATCATTAATAACCTTTGAATATGAGGACGGAGTTAGGATGCATGACCTGCTGCAAGAGTTCGGCAGGAGCATAGTTCGACAAAGTGCACCAAATGAGCCATGGAAGTGGAGCAGAATATGGAGCGCAAAGGATTTGCAAAGAATTATGTTTGAAGATATGGTAATGGATGACGTTAAAGCCATAAGATTGAGGAGAGAGTACATTTCTGGTAAAACAAGAAATACAACATCAACTGGTGAAATATTATCAAGAATGAGACGACTTGAATTTCTCATAATAGAGGATGGCAGTTTTTCTGGAAGCCTTAATAGTATGTCTAATGAATTGCGATATTTTGAATGGGAATTTTATCCATTTACATATTTTCCCTCAAGTTGCAAACTATCCAAGCTTTTTGAATTGATCTTACCATTCAGCTACATTAAACAATTATGGGAAGGCACAATGTGTTTGGACAATTTGAAGATATTGGATCTCAGTTACTCCGAAAATCTTGTTAAGATTCCAAACCTTAGCGGTGCTCCAAATCTTGAAGAGCTGATCCTTAAAGGATGTACAAAGCTTAAGCACATACATCCATCAACCGGAGACCTAACAAAACTTGTTAAGTTAGATTTGATTGGCTGCACAAGTTTATTGAGTTTCCCCATCACTGTATTCGGTATAACTTCACTTCGATCTGTAAGCATGAATGGTTGCTCAAGTTTATTTAGTGGGGAAAAGTCAGAGAATGGAAGCGAGAATGCGGTTCAACAGGACAATCATTTGTTCTGTCTATGGAAGCCTTCTCTGTCCTGTCTAAGCTGCTTGTATGAGCTAGATTTAAGTTATTGTAATTTGTATAGTATCCCTGATGCTATTGTAACCTTACACCATTTAGAGTTCCTAAGATTGAGGGGAAACAATATAGTTAGAGTACCTGATTTTATAAACAAGTTACCCAGATTGAGAGTGTTGAACTTAGATCACTGTAAACGGTTAATGTATATATCTGAGTTCCCATTACCCTTGCTAACAGAAGAGCGATTAAAATATGATTTTAGAAGATTGAGCATGTTCAACTGTCCAAAAGTAGTTGAGAGGATAAGTGGAATGGCAGTTTCATGGATGAGAAAGTGCATTAAGGTGATAGATGAGAAATTCAATCTTAGCCTTGTTTTTGTACTTCCAGGAAGTGGAATTCCGAGGTGGTTTAACCATCAGAGTGAGGGTGGAGGTGACTCGATGAGGATAGAGTCATTTCCGAATTTGAATGACAACAAATGGAATGGCATTGCCCTTTGTGCCCAGATACAAACCCATTATAATCCAGCTGCTTCCACTCTTCTAGAACATCGCAATTCCATTTACTTACAAATTTATCATCCACCATCAAGAGAGGCCAACGAATTAACCTTTGTATGTTATACTGGAGAGATGAATGTGATGACGGGTGAATTGGTTCACCTCTGCATATTATATATTTCTCGTCAGCTATTCATTTCGTTTAAAGAAGGCCATGGAATTCAGGAAGAGTTAGGCTGTTTGGAGTTTTACTTCAGCTCATATCCATCGCCTTTTGATATTGAAGTGAAGAAGTGGGGAATGCGTGTGGTACTCAACGAGGATATGGAAGAAGCCAGCTCTGATGGATATTGA 2928 0.3811 MQGQHISTELIQAIEGSQVLIAIFSKNYANSSWCLQELAKMLDCSTKVATPILLPIFYDVSPSEVRKQREVYGKALVEHEERFKHDSEMVQQWREALVQVANLSGWDIQNKQESVEIEKIVKRARSILSSNSLSVDGLVGMQSRVEELENLIDFNSNREEVRVVGICGMGGIGKSTLAKVIYGRSLHQYSARCFVDDISKVFREDGLLSLQKQFIHQITNGEISEIFNHYEANRLIRTTLRHQKSLIFLDNADEVGQLQKLGLTRDCLCPGSRVIVISRDRHVLKSFEPDEIYDAQLLNEDESHELFCRKAFKENTIMSCDDISKEYRDLTDLVLEYAQGLPLAIEILGSFLRHRDISEWRSALARLRNNPKKEIVDIFQMSFDALDSLEKEIFLDIACFFNHGYKYNVPKLLDYRGFHPNIGLSVLIDKSLITFEYEDGVRMHDLLQEFGRSIVRQSAPNEPWKWSRIWSAKDLQRIMFEDMVMDDVKAIRLRREYISGKTRNTTSTGEILSRMRRLEFLIIEDGSFSGSLNSMSNELRYFEWEFYPFTYFPSSCKLSKLFELILPFSYIKQLWEGTMCLDNLKILDLSYSENLVKIPNLSGAPNLEELILKGCTKLKHIHPSTGDLTKLVKLDLIGCTSLLSFPITVFGITSLRSVSMNGCSSLFSGEKSENGSENAVQQDNHLFCLWKPSLSCLSCLYELDLSYCNLYSIPDAIVTLHHLEFLRLRGNNIVRVPDFINKLPRLRVLNLDHCKRLMYISEFPLPLLTEERLKYDFRRLSMFNCPKVVERISGMAVSWMRKCIKVIDEKFNLSLVFVLPGSGIPRWFNHQSEGGGDSMRIESFPNLNDNKWNGIALCAQIQTHYNPAASTLLEHRNSIYLQIYHPPSREANELTFVCYTGEMNVMTGELVHLCILYISRQLFISFKEGHGIQEELGCLEFYFSSYPSPFDIEVKKWGMRVVLNEDMEEASSDGY 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241694g00019 975 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 106 IPR035897 -
Stsc241694g00019 975 ProSiteProfiles TIR domain profile. 1 128 IPR000157 GO:0007165
Stsc241694g00019 975 Gene3D - 1 132 IPR035897 -
Stsc241694g00019 975 Gene3D Ribonuclease Inhibitor 491 673 IPR032675 -
Stsc241694g00019 975 Pfam TIR domain 2 123 IPR000157 GO:0007165
Stsc241694g00019 975 SMART till_3 1 103 IPR000157 GO:0007165
Stsc241694g00019 975 Gene3D - 133 292 IPR027417 -
Stsc241694g00019 975 PRINTS Disease resistance protein signature 239 253 - -
Stsc241694g00019 975 PRINTS Disease resistance protein signature 163 178 - -
Stsc241694g00019 975 PRINTS Disease resistance protein signature 338 352 - -
Stsc241694g00019 975 PRINTS Disease resistance protein signature 579 595 - -
Stsc241694g00019 975 Pfam C-JID domain 819 967 IPR045344 -
Stsc241694g00019 975 SUPERFAMILY "Winged helix" DNA-binding domain 374 476 IPR036390 -
Stsc241694g00019 975 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 134 397 IPR027417 -
Stsc241694g00019 975 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 2 666 IPR044974 GO:0006952
Stsc241694g00019 975 Gene3D - 297 387 IPR042197 -
Stsc241694g00019 975 Pfam Leucine rich repeat 700 755 IPR001611 GO:0005515
Stsc241694g00019 975 Pfam NB-ARC domain 148 386 IPR002182 GO:0043531
Stsc241694g00019 975 Gene3D Ribonuclease Inhibitor 680 816 IPR032675 -
Stsc241694g00019 975 SUPERFAMILY L domain-like 502 775 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241694g00019 Stsc-Chr241694 120293 125352 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241694g00019 11 781 WRKY Transcription Factor Family AT4G12020 30.341 2.20e-75 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241694g00019 - - ahf:112792657 1222.61