Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241694g00017 ATGGCGGCATCAAGTAGCACAACACCAAAATATGATGTGTTTGTGAGTTTTAGAGGCGAGGACACTCGCAATAATTTTGCTGATCATCTTTTTGCTGCTTTCCGTAGAAACGGAATTGTTGCATTCAGGGACGATAGGAATCTCATGCAAGGACAACATATCTCCACTGAGCTGATTCAAGCAATTGAAGGATCTCAGGTTTTGATTGCCATCTTCTCTAAGAACTATGCTAACTCTTCATGGTGCTTGCAGGAACTTGCTAAGATGCTAGATTGCAGCACTAAGGTAGCAACACCAATTTTACTGCCTATTTTCTATGATGTGAGTCCGTCCGAGGTTCGTAAACAAAGGGAAGTCTATGGGAAAGCATTGGTTGAACATGAAGAAAGATTCAAACATGACTCGGAGATGGTGCAACAATGGAGGGAAGCTCTTGTGCAAGTGGCCAATCTTTCTGGTTGGGATATACAAAATAAGCAGGAGAGTGTAGAGATTGAGAAAATTGTTAAAAGGGCTAGAAGCATATTAAGTTCGAACTCATTAAGTGTGGATGGGTTGGTTGGGATGCAATCTCGTGTAGAAGAATTGGAAAACCTTATTGATTTCAACTCTAATAGGGAAGAAGTTCGGGTTGTAGGCATATGTGGGATGGGCGGGATAGGAAAGTCAACGCTTGCTAAAGTGATATACGGTAGAAGCCTTCATCAGTACAGTGCTCGTTGTTTTGTTGATGATATAAGCAAAGTTTTTCGTGAGGATGGTTTGCTTTCTCTACAAAAGCAGTTTATTCATCAAATTACAAACGGAGAGATCTCAGAAATATTCAATCATTATGAGGCTAATCGTTTGATAAGAACTACATTACGCCATCAAAAGTCTCTTATTTTTCTAGATAATGCTGATGAAGTTGGACAATTACAGAAATTGGGTCTGACTCGTGATTGTCTTTGCCCGGGAAGTAGAGTTATAGTAATTTCAAGAGATCGACATGTCTTGAAATCTTTCGAACCAGATGAAATATACGATGCTCAACTCTTGAACGAGGATGAATCTCATGAATTGTTTTGTAGAAAGGCCTTCAAAGAAAATACAATTATGAGTTGTGATGACATTAGCAAAGAGTATAGAGACTTGACAGATCTTGTCCTAGAATATGCTCAGGGTCTTCCTTTGGCAATTGAAATTTTGGGGTCATTTCTACGCCATCGTGATATCTCTGAATGGAGAAGTGCCTTGGCCAGACTCAGAAATAATCCAAAGAAAGAAATTGTAGATATATTTCAAATGAGTTTTGATGCATTAGATTCCCTCGAAAAAGAAATATTTTTGGATATTGCTTGTTTCTTTAACCACGGATACAAGTATAATGTGCCAAAACTTTTAGACTATCGTGGTTTTCATCCAAATATTGGATTAAGTGTCCTTATTGATAAATCATTAATAACCTTTGAATATGAGGACGGAGTTAGGATGCATGACCTGCTGCAAGAGTTCGGCAGGAGCATAGTTCGACAAAGTGCACCAAATGAGCCATGGAAGTGGAGCAGAATATGGAGCGCAAAGGATTTGCAAAGAATTATGTTTGAAGATATGGTAATGGATGACGTTAAAGCCATAAGATTGAGGAGAGAGTACATTTCTGGTAAAACAAGAAATACAACATCAACTGGTGAAATATTATCAAGAATGAGACGACTTGAATTTCTCATAATAGAGGATGGCAGTTTTTCTGGAAGCCTTAATAGTATGTCTAATGAATTGCGATATTTTGAATGGGAATTTTATCCATTTACATATTTTCCCTCAAGTTGCAAACTATCCAAGCTTTTTGAATTGATCTTACCATTCAGCTACATTAAACAATTATGGGAAGGCACAATGTGTTTGGACAATTTGAAGATATTGGATCTCAGTTACTCCGAAAATCTTGTTAAGATTCCAAACCTTAGCGGTGCTCCAAATCTTGAAGAGCTGATCCTTAAAGGATGTACAAAGCTTAAGCACATACATCCATCAACCGGAGACCTAACAAAACTTGTTAAGTTAGATTTGATTGGCTGCACAAGTTTATTGAGTTTCCCCATCACTGTATTCGGTATAACTTCACTTCGATCTGTAAGCATGAATGGTTGCTCAAGTTTATTTAGTGGGGAAAAGTCAGAGAATGGAAGCGAGAATGCGGTTCAACAGGACAATCATTTGTTCTGTCTATGGAAGCCTTCTCTGTCCTGTCTAAGCTGCTTGTATGAGCTAGATTTAAGTTATTGTAATTTGTATAGTATCCCTGATGCTATTGTAACCTTACACCATTTAGAGTTCCTAAGATTGAGGGGAAACAATATAGTTAGAGTACCTGATTTTATAAACAAGTTACCCAGATTGAGAGTGTTGAACTTAGATCACTGTAAACGGTTAATGTATATATCTGAGTTCCCATTACCCTTGCTAACAGAAGAGCGATTAAAATATGATTTTAGAAGATTGAGCATGTTCAACTGTCCAAAAGTAGTTGAGAGGATAAGTGGAATGGCAGTTTCATGGATGAGAAAGTGCATTAAGGTGTGTGCGTATTGTTGTTCTCATTCGTCATCTTTTTTGTGTTGTTTATGGGGTGTGTATCTATCCAATTAA 2631 0.3774 MAASSSTTPKYDVFVSFRGEDTRNNFADHLFAAFRRNGIVAFRDDRNLMQGQHISTELIQAIEGSQVLIAIFSKNYANSSWCLQELAKMLDCSTKVATPILLPIFYDVSPSEVRKQREVYGKALVEHEERFKHDSEMVQQWREALVQVANLSGWDIQNKQESVEIEKIVKRARSILSSNSLSVDGLVGMQSRVEELENLIDFNSNREEVRVVGICGMGGIGKSTLAKVIYGRSLHQYSARCFVDDISKVFREDGLLSLQKQFIHQITNGEISEIFNHYEANRLIRTTLRHQKSLIFLDNADEVGQLQKLGLTRDCLCPGSRVIVISRDRHVLKSFEPDEIYDAQLLNEDESHELFCRKAFKENTIMSCDDISKEYRDLTDLVLEYAQGLPLAIEILGSFLRHRDISEWRSALARLRNNPKKEIVDIFQMSFDALDSLEKEIFLDIACFFNHGYKYNVPKLLDYRGFHPNIGLSVLIDKSLITFEYEDGVRMHDLLQEFGRSIVRQSAPNEPWKWSRIWSAKDLQRIMFEDMVMDDVKAIRLRREYISGKTRNTTSTGEILSRMRRLEFLIIEDGSFSGSLNSMSNELRYFEWEFYPFTYFPSSCKLSKLFELILPFSYIKQLWEGTMCLDNLKILDLSYSENLVKIPNLSGAPNLEELILKGCTKLKHIHPSTGDLTKLVKLDLIGCTSLLSFPITVFGITSLRSVSMNGCSSLFSGEKSENGSENAVQQDNHLFCLWKPSLSCLSCLYELDLSYCNLYSIPDAIVTLHHLEFLRLRGNNIVRVPDFINKLPRLRVLNLDHCKRLMYISEFPLPLLTEERLKYDFRRLSMFNCPKVVERISGMAVSWMRKCIKVCAYCCSHSSSFLCCLWGVYLSN 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241694g00017 876 Pfam TIR domain 10 171 IPR000157 GO:0007165
Stsc241694g00017 876 SMART till_3 10 151 IPR000157 GO:0007165
Stsc241694g00017 876 FunFam Disease resistance protein (TIR-NBS-LRR class) 7 178 - -
Stsc241694g00017 876 SUPERFAMILY "Winged helix" DNA-binding domain 422 524 IPR036390 -
Stsc241694g00017 876 PRINTS Disease resistance protein signature 211 226 - -
Stsc241694g00017 876 PRINTS Disease resistance protein signature 627 643 - -
Stsc241694g00017 876 PRINTS Disease resistance protein signature 287 301 - -
Stsc241694g00017 876 PRINTS Disease resistance protein signature 386 400 - -
Stsc241694g00017 876 Gene3D Ribonuclease Inhibitor 537 720 IPR032675 -
Stsc241694g00017 876 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 714 IPR044974 GO:0006952
Stsc241694g00017 876 Gene3D Ribonuclease Inhibitor 728 865 IPR032675 -
Stsc241694g00017 876 Pfam Leucine rich repeat 748 803 IPR001611 GO:0005515
Stsc241694g00017 876 Gene3D - 4 180 IPR035897 -
Stsc241694g00017 876 Gene3D - 181 340 IPR027417 -
Stsc241694g00017 876 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 154 IPR035897 -
Stsc241694g00017 876 SUPERFAMILY L domain-like 550 822 - -
Stsc241694g00017 876 ProSiteProfiles TIR domain profile. 9 176 IPR000157 GO:0007165
Stsc241694g00017 876 Gene3D - 345 435 IPR042197 -
Stsc241694g00017 876 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 445 IPR027417 -
Stsc241694g00017 876 Pfam NB-ARC domain 196 434 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241694g00017 Stsc-Chr241694 120293 125382 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241694g00017 6 829 WRKY Transcription Factor Family AT4G12020 29.941 4.33e-79 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241694g00017 - - ahf:112792657 1196.8