Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241694g00015 ATGGAAGTTATGTCTGTTACAATCACCACGTTCCCAAAATTTCAAACCTTCTCCTTTCTCAAACCGAAAACACCACCCATCCAAATTCACCACCTTCCTCTAACGATAACAACTTTACCCGCCAAAACAAGTACCCATTCCAATCTTTCTTCTTCTTCTAGAAGGATATCCTCTCAAATCCCCAGTTTACCGGGGGTCTTGTCAGTTAGGCCTGACCCGGATTTCAACTCTTCCAAAAAGGACTATAGTCTATCAGGTGGTCAAGAACAATTTGAAACCAACACGTTGTTGTTCCCTGCTGGGAATTCAAAGCATTGGCTTGTTAGAATTGATAAACCTGCGGTTGGGGTTGTTACAAAGGCTCAGATTGTTGATTACTATGTTCAATTACTGACCAAGGTCATGGGGAATGAGAAGGATGCTCAGATGTGCATATATCATGTGTCCTGGAAAAACAACTTTGGCTTTTGTTGTGAACTTGATGATGACTGTGCACAGGAGTTAGCTGGTGTGCCTGGTGTCTTATCAGTTCAACCAGATAATAATTTTGAGTCAGAAAATAAGGATTATGAAGGTAATAACGTAGGAAACAGTTTGAGTGTGCAAAACTCTTTTGGAGCAAGTCAGGAAACTCCCCTACGAACAAAAAAGCTTTTTGTAACAGGGCTATCATTTTATACATCTGAGAAAACCTTACGTGCAGCATTTGAAGGTTTTGGTGATCTTGTTGAAGTCAAAATTATCATGGATAAAATTTCCAAAAGGTCCAAGGGTTATGCATTTGTTGAGTACACCACAGAGGAGGCTGCAAGCGCAGCACTGAAAGAGATGAATGGCAAGATTATTAATGGATGGATGATAGTGGTGGATGTTGCCAAGACTAACCCACCAAGACATAACAGGGGTCATGTCAGACCATCAGTTTAA 927 0.4088 MEVMSVTITTFPKFQTFSFLKPKTPPIQIHHLPLTITTLPAKTSTHSNLSSSSRRISSQIPSLPGVLSVRPDPDFNSSKKDYSLSGGQEQFETNTLLFPAGNSKHWLVRIDKPAVGVVTKAQIVDYYVQLLTKVMGNEKDAQMCIYHVSWKNNFGFCCELDDDCAQELAGVPGVLSVQPDNNFESENKDYEGNNVGNSLSVQNSFGASQETPLRTKKLFVTGLSFYTSEKTLRAAFEGFGDLVEVKIIMDKISKRSKGYAFVEYTTEEAASAALKEMNGKIINGWMIVVDVAKTNPPRHNRGHVRPSV 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241694g00015 308 SUPERFAMILY RNA-binding domain, RBD 208 304 IPR035979 GO:0003676
Stsc241694g00015 308 Gene3D - 185 307 IPR012677 -
Stsc241694g00015 308 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 218 284 IPR000504 GO:0003723
Stsc241694g00015 308 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 90 285 IPR039206 GO:0016554
Stsc241694g00015 308 SMART rrm1_1 217 290 IPR000504 GO:0003723
Stsc241694g00015 308 FunFam Organelle RRM domain-containing protein 1, chloroplastic 94 183 - -
Stsc241694g00015 308 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 98 184 IPR037045 -
Stsc241694g00015 308 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 216 294 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241694g00015 Stsc-Chr241694 105341 109924 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241694g00015 208 298 C2H2 Transcription Factor Family AT2G19380 31.868 8.79e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241694g00015 - - gmx:100791652 408.683