Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241694g00007 ATGGAACCACTTACTTCAACTGACGAAACCGCCACAACAACCAGCGACTCACCTCCCCCTCCGCCGACAACCACCGCCGAGGTTGAGTCCCGGAAGCTACCCTCCTCCAAGTACAAAGGCGTCGTGCCGCAGCCCAACGGCCGCTGGGGCGCACAGATTTACGAGAAGCACCAGCGCGTCTGGCTTGGCACCTTCAACGAGGAGAACCAAGCCGCCAGGGCTTACGACATCGCCGCCGTTAGGTTCCGCGGCAAGGACGCAGTCACGAACTTCAAGCACGTCGCCGTCGGCGACGGCGACTCCGACGAATCCGTCGACGGCTCCGAAGCCGAGTTTCTGAACTCGCATTCCAAATCCGAGATCGTGGACATGCTGAGGAAGCACACCTACGAGGACGAGCTCCGTCAGAGCAAGAGAGACGGCGCGTGCGGCGGAAGGAACCACCGACGATGCCACGGCGACAACACCGACGCGTCTTCCTTCGGTTCTGAAGGCGCGTGGGATGTTCGCGCGCGTGAGCATCTGTTCGAGAAAACGGTTACGCCTAGCGACGTTGGGAAACTGAACCGATTAGTTATACCGAAACAGCACGCAGAGAAGCACTTTCCGTTACAGGGAAACGGTTGTGCCGCGGCGAAAGGAGTGCTGTTGAATTTCGAAGACGTTGGAGGGAAAGTGTGGCGGTTCCGTTACTCGTATTGGAACAGTAGCCAGAGCTACGTGCTAACGAAAGGGTGGAGCCGGTTCGTTAAGGAGAAGAGCCTCCGGGCTGGCGATTCGGTTCAGTTTTACCGGTCGAGCGGACCGGACAGACAGCTGTACATTGACTGCAAGGCAAGGATGGGTGGTGGTGGCGTTGTAAATAATAGCCCTAACAATAATAATGAGGATGATCATAATAATCAAAGCAAAGATAATGATTTGTTGATTCCGGTTGGACCGGTGGTTGAGCCGGTACAGATGGTTCGGCTCTTCGGGGTCAACCTTTTGAAGCTGCCTGGCTCGGATGGGGTTGGTGTTGGTGGTGGATGCAATGGGAAGAGGAAAGAGATGGGGGTGTTTGCATTAGAATGTAGCAAGAAGCCAAAGATTATTGGAGCTTTGTAA 1107 0.5556 MEPLTSTDETATTTSDSPPPPPTTTAEVESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEENQAARAYDIAAVRFRGKDAVTNFKHVAVGDGDSDESVDGSEAEFLNSHSKSEIVDMLRKHTYEDELRQSKRDGACGGRNHRRCHGDNTDASSFGSEGAWDVRAREHLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLQGNGCAAAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKSLRAGDSVQFYRSSGPDRQLYIDCKARMGGGGVVNNSPNNNNEDDHNNQSKDNDLLIPVGPVVEPVQMVRLFGVNLLKLPGSDGVGVGGGCNGKRKEMGVFALECSKKPKIIGAL 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241694g00007 368 Gene3D - 166 284 IPR015300 -
Stsc241694g00007 368 FunFam AP2 domain-containing protein RAP2.8 36 93 - -
Stsc241694g00007 368 SMART B3_2 176 280 IPR003340 GO:0003677
Stsc241694g00007 368 Pfam B3 DNA binding domain 176 275 IPR003340 GO:0003677
Stsc241694g00007 368 CDD B3_DNA 174 266 IPR003340 GO:0003677
Stsc241694g00007 368 SUPERFAMILY DNA-binding pseudobarrel domain 173 279 IPR015300 -
Stsc241694g00007 368 MobiDBLite consensus disorder prediction 1 44 - -
Stsc241694g00007 368 CDD AP2 36 94 IPR001471 GO:0003700|GO:0006355
Stsc241694g00007 368 ProSiteProfiles AP2/ERF domain profile. 37 92 IPR001471 GO:0003700|GO:0006355
Stsc241694g00007 368 SUPERFAMILY DNA-binding domain 36 92 IPR016177 GO:0003677
Stsc241694g00007 368 Gene3D AP2/ERF domain 36 93 IPR036955 GO:0003700|GO:0006355
Stsc241694g00007 368 MobiDBLite consensus disorder prediction 285 307 - -
Stsc241694g00007 368 SMART rav1_2 37 98 IPR001471 GO:0003700|GO:0006355
Stsc241694g00007 368 ProSiteProfiles B3 DNA-binding domain profile. 176 279 IPR003340 GO:0003677
Stsc241694g00007 368 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 32 342 IPR044800 GO:0003700
Stsc241694g00007 368 Pfam AP2 domain 36 84 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241694g00007 Stsc-Chr241694 56944 59045 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241694g00007 22 368 RAV Transcription Factor Family AT1G68840 57.746 2.30e-124 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Stsc241694g00007 B3 5.5e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241694g00007 K09287 - gmx:100789009 451.44