Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241694g00005 ATGCATGGTCTCAGGCTAAGGCTATTGAAGTTGTTTATATGTTCTTGTTTATGCAGATCATCATGGTTGGTGGACAAAAGTAGAATTGCAACCAAGATAAAGAGTGCATCCGGAGCAAGTGGTAAAGTTTTATGGAAAAGCAATCCTACCAGAGCTTGTCCAAATTGTCAACATGTTATTGATAACAGTGATGTAGCACAAGAGTGGCCTGGATTACCGAAAGGTGTGAAATTCGATCCATCTGATCAAGAGATAATATCACACTTGCTTGCAAAAGTTGGCTCCTCAAGTTCACAGCCTCACCCTTTCATTGATGAATTCATTGCTAATCTTGAAGTGGATGAAGGAATTTGTTATACTCATCCTAAACATTTACCAGGTGTGAAGCAAGATGGTAGTGCTACACACTTTTTCCACAGATCAATCAAGGCTTATACTACCGGCAATCGAAAGCGTCGGAAAATAAATTACCAGGATGATGGTGATGTCCGTTGGCACAAGACTGGAAAGACTAAACCTGTCATATCGGACGGCGTTCAGAAAGGCTGTAAAAAGATTATGGTTCTATATATGACTAATTCAGTTAGAGGAGTAAAATCTGAGAAAACTAATTGGGTCATGCATCAGTATCACTTAGGAACAGATGAAGATGAAAAGGAAGGAGAGTATGTTATCTCTAAAGTGTTTTACCAGCAGCAACAAGTTAAATTCGGCGAAAAAGATGATCATGATGATGTTCCTGGAACCAATGAAGCAACTGTTGTGAAATCTGATCCGGTCACTTTGGAACCTCCTCATAGTGAAAATCGATGTTCAGATCTCGACATGGGAGAAAAATCACATCAGATTCCTCAGTTTGATCCTCAGACAGATTATGTAGAAGAAGATAAAGCTGATTGTGAAGAGATTGAGAAAACTGACGTGTCGATGGCGGATGCTCAAAATAATGGTGATGGAGAACAAAAATGGTGGGACAGTGAGTCACAGAATTTGTTGGATTCACAACAACTTGTGGAAGCATTGGCCTTGTGTGATGATCTCCTCCATAGCCAGAGTTCCAATAAGGATGATGAAAATGGAGAACACAAGGAGAAGTTGAGTCTTTCCATCTATGCTCATCTAGGACCTGAGCATCTGAAGAAAGATATTGAAGAATGCCAAAACCTTACCCTTGATCCTGCAAACACCGAACTCGAGACACCACCTTCCGAGTTTCGACTAAGTCAGCTGGTATTCCCTATTATTCCCTATTCCCATGTTTCTCAAATCTCAATCATTGACTGA 1284 0.4034 MHGLRLRLLKLFICSCLCRSSWLVDKSRIATKIKSASGASGKVLWKSNPTRACPNCQHVIDNSDVAQEWPGLPKGVKFDPSDQEIISHLLAKVGSSSSQPHPFIDEFIANLEVDEGICYTHPKHLPGVKQDGSATHFFHRSIKAYTTGNRKRRKINYQDDGDVRWHKTGKTKPVISDGVQKGCKKIMVLYMTNSVRGVKSEKTNWVMHQYHLGTDEDEKEGEYVISKVFYQQQQVKFGEKDDHDDVPGTNEATVVKSDPVTLEPPHSENRCSDLDMGEKSHQIPQFDPQTDYVEEDKADCEEIEKTDVSMADAQNNGDGEQKWWDSESQNLLDSQQLVEALALCDDLLHSQSSNKDDENGEHKEKLSLSIYAHLGPEHLKKDIEECQNLTLDPANTELETPPSEFRLSQLVFPIIPYSHVSQISIID 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241694g00005 427 Pfam No apical meristem (NAM) protein 73 212 IPR003441 GO:0003677|GO:0006355
Stsc241694g00005 427 FunFam NAC domain-containing protein 8 81 235 - -
Stsc241694g00005 427 Gene3D NAC domain 81 236 IPR036093 GO:0003677|GO:0006355
Stsc241694g00005 427 SUPERFAMILY NAC domain 57 231 IPR036093 GO:0003677|GO:0006355
Stsc241694g00005 427 ProSiteProfiles NAC domain profile. 72 231 IPR003441 GO:0003677|GO:0006355
Stsc241694g00005 427 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 20 387 IPR044799 GO:0003700
Stsc241694g00005 427 MobiDBLite consensus disorder prediction 259 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241694g00005 Stsc-Chr241694 26586 29825 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241694g00005 49 238 NAC Transcription Factor Family AT1G28470 58.163 2.34e-72 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc241694g00005 NAM 5.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241694g00005 - - gmx:100787422 593.964