Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241694g00004 ATGAATCTCTGTCTCTTCACTTGCATCACCAGCTCTTCTCTCTCTCTCTTTCTCTTTCTCTCCATGGCCGGATCATCATGGTTGGTGGACAAAAGTAGAATTGCAACCAAGATAAAGAGTGCATCCGGAGCAAGTGGTAAAGTTTTATGGAAAAGCAATCCTACCAGAGCTTGTCCAAATTGTCAACATGTTATTGATAACAGTGATGTAGCACAAGAGTGGCCTGGATTACCGAAAGGTGTGAAATTCGATCCATCTGATCAAGAGATAATATCACACTTGCTTGCAAAAGTTGGCTCCTCAAGTTCACAGCCTCACCCTTTCATTGATGAATTCATTGCTAATCTTGAAGTGGATGAAGGAATTTGTTATACTCATCCTAAACATTTACCAGGTGTGAAGCAAGATGGTAGTGCTACACACTTTTTCCACAGATCAATCAAGGCTTATACTACCGGCAATCGAAAGCGTCGGAAAATAAATTACCAGGATGATGGTGATGTCCGTTGGCACAAGACTGGAAAGACTAAACCTGTCATATCGGACGGCGTTCAGAAAGGCTGTAAAAAGATTATGGTTCTATATATGACTAATTCAGTTAGAGGAGTAAAATCTGAGAAAACTAATTGGGTCATGCATCAGTATCACTTAGGAACAGATGAAGATGAAAAGGAAGGAGAGTATGTTATCTCTAAAGTGTTTTACCAGCAGCAACAAGTTAAATTCGGCGAAAAAGATGATCATGATGATGTTCCTGGAACCAATGAAGCAACTGTTGTGAAATCTGATCCGGTCACTTTGGAACCTCCTCATAGTGAAAATCGATGTTCAGATCTCGACATGGGAGAAAAATCACATCAGATTCCTCAGTTTGATCCTCAGACAGATTATGTAGAAGAAGATAAAGCTGATTGTGAAGAGATTGAGAAAACTGACGTGTCGATGGCGGATGCTCAAAATAATGGTGATGGAGAACAAAAATGGTGGGACAGTGAGTCACAGAATTTGTTGGATTCACAACAACTTGTGGAAGCATTGGCCTTGTGTGATGATCTCCTCCATAGCCAGAGTTCCAATAAGGATGATGAAAATGGAGAACACAAGGAGAAGTTGAGTCTTTCCATCTATGCTCATCTAGGACCTGAGCATCTGAAGAAAGATATTGAAGAATGCCAAAACCTTACCCTTGATCCTGCAAACACCGAACTCGAGACACCACCTTCCGAGTTTCGACTAAGTCAGCTGGAATTCGGTTCGCAGGATAGCTTTGTTTCCTGGAGTGGCGGCAAGGCAGTCGACTAA 1302 0.4163 MNLCLFTCITSSSLSLFLFLSMAGSSWLVDKSRIATKIKSASGASGKVLWKSNPTRACPNCQHVIDNSDVAQEWPGLPKGVKFDPSDQEIISHLLAKVGSSSSQPHPFIDEFIANLEVDEGICYTHPKHLPGVKQDGSATHFFHRSIKAYTTGNRKRRKINYQDDGDVRWHKTGKTKPVISDGVQKGCKKIMVLYMTNSVRGVKSEKTNWVMHQYHLGTDEDEKEGEYVISKVFYQQQQVKFGEKDDHDDVPGTNEATVVKSDPVTLEPPHSENRCSDLDMGEKSHQIPQFDPQTDYVEEDKADCEEIEKTDVSMADAQNNGDGEQKWWDSESQNLLDSQQLVEALALCDDLLHSQSSNKDDENGEHKEKLSLSIYAHLGPEHLKKDIEECQNLTLDPANTELETPPSEFRLSQLEFGSQDSFVSWSGGKAVD 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241694g00004 433 Gene3D NAC domain 86 241 IPR036093 GO:0003677|GO:0006355
Stsc241694g00004 433 FunFam NAC domain-containing protein 8 86 240 - -
Stsc241694g00004 433 ProSiteProfiles NAC domain profile. 77 236 IPR003441 GO:0003677|GO:0006355
Stsc241694g00004 433 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 25 392 IPR044799 GO:0003700
Stsc241694g00004 433 MobiDBLite consensus disorder prediction 264 297 - -
Stsc241694g00004 433 Pfam No apical meristem (NAM) protein 78 217 IPR003441 GO:0003677|GO:0006355
Stsc241694g00004 433 SUPERFAMILY NAC domain 62 236 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241694g00004 Stsc-Chr241694 26586 29833 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241694g00004 54 243 NAC Transcription Factor Family AT1G28470 58.163 1.17e-72 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc241694g00004 NAM 5.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241694g00004 - - gmx:100787422 624.78