Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241694g00002 ATGATGCATCAACAGAACATGATGATGATGAGCGATGACATGATCTTTGGAGGAGGAAGAGAGTTCATCAACAACAACAACAACATGAACATGATGATGATGAACATGTTCCCTTCTTCTTCTGATCATCAAATCATGCAGATGCAGCAGCAACAATTCAACAACAACCATGATTATTCTTATTCTTCTTCCTTTATTATGCCTCCACCACCACCACCACCACAACCATATGCAAGCTTCTTCAACAATAACAGTAGTAGAAGGATGATTCATCATCCATCATCATCATCAGTAGGTGGAGGGGGGTTTGATCTGCAAGCTGAACTGAGCAAGATGAGTGCACAGGAAATCATGGAGGCAAAGGCACTAGCTGCATCAAAAAGCCACAGTGAAGCTGAGAGGAGGCGTAGAGAGAGGATCAATAATCATCTTTCTAAGCTCAGAACCTTGTTGCCTAGCACTACCAAAACAGATAAAGCATCGTTACTAGCAGAAGTGATTGAACATGTGAAGGAACTCAAACGCCAAACATCACTCATTGCTGAAACCACTTCCCTTCCAACTGAATCCGACGAGCTCACCGTCGACGACGCTTCCGACGAAGACGGCAACTTCATCATCAAAGCCTCTCTGTGCTGCCAAGACCGTTCTGATCTCTTGCCTCAACTCATCACCACCTTGAAATCAATGAACCTTCGAACCCTAAAAGCGGATATCACCACGCTCGGCGGCCGCGTCAAGAACGTCTTGTTCATCACTTCTGATCAAGAAAATTGTTACCATGATAATGATAATCATGACAATGATAATTACCAGTACTGCATTACTTCAATACAAGAAGCATTGAAGGCTGTTATGGAGAAAATTAATGGTGCTGATTCTGGTAATTCTTCTTCTTCTGCAAGTGTTAAGAGACAAAGGACTAACAATAATAATAATAATAATAATAATAATATCATATCATCCATTTCTTAA 975 0.4123 MMHQQNMMMMSDDMIFGGGREFINNNNNMNMMMMNMFPSSSDHQIMQMQQQQFNNNHDYSYSSSFIMPPPPPPPQPYASFFNNNSSRRMIHHPSSSSVGGGGFDLQAELSKMSAQEIMEAKALAASKSHSEAERRRRERINNHLSKLRTLLPSTTKTDKASLLAEVIEHVKELKRQTSLIAETTSLPTESDELTVDDASDEDGNFIIKASLCCQDRSDLLPQLITTLKSMNLRTLKADITTLGGRVKNVLFITSDQENCYHDNDNHDNDNYQYCITSIQEALKAVMEKINGADSGNSSSSASVKRQRTNNNNNNNNNNIISSIS 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241694g00002 324 PANTHER TRANSCRIPTION FACTOR BHLH30 41 313 IPR045847 GO:0003700|GO:0006355
Stsc241694g00002 324 FunFam transcription factor bHLH30 119 182 - -
Stsc241694g00002 324 Pfam Helix-loop-helix DNA-binding domain 127 173 IPR011598 GO:0046983
Stsc241694g00002 324 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 128 182 IPR036638 GO:0046983
Stsc241694g00002 324 SMART finulus 130 179 IPR011598 GO:0046983
Stsc241694g00002 324 Gene3D - 118 182 IPR036638 GO:0046983
Stsc241694g00002 324 MobiDBLite consensus disorder prediction 293 324 - -
Stsc241694g00002 324 CDD bHLH_AtAIG1_like 119 196 - -
Stsc241694g00002 324 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 124 173 IPR011598 GO:0046983
Stsc241694g00002 324 CDD ACT_UUR-ACR-like 210 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241694g00002 Stsc-Chr241694 11335 14395 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241694g00002 98 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 66.055 2.55e-85 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc241694g00002 HLH 4.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241694g00002 - - mnt:21405749 291.197