Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241693g00018 ATGTGTATTGAAAAGGTGGCGAATCCTCAAGAGAAAGGAAACAAGGTTGTTGATGAGAACAGGGAATTGGAACTTGATAAGAGGATAAATAACAGTTCTTCTTCTGCATTATTGCCATCATCATCAATGCATATGATATTCCCAGGTTTGAATAGGGAGAGGGAGATGTCTGCCATGGTTTCAGCTTTGACCCATGTTGTCTCTGGTGAAGTTCCAACCGGTGCAGATGATGAATATGCACTTCCAATAACAAGGGATATGGCTTATTATGGTTCTTCTTCTTCAGCAATGTTTTCTAATGATTATGTTGTTGGAAGTGGCTCTTCTTCTATCAAGAGAACTAGGGAACAAGATGGTGTATCCTTTGTTGACCACTTCTCTTCTTCATCACATGGTGGAGCTTCTTCAACATCTCCTACTACTACTATTCATACAACAGTAACCAGAGAAAGTTCAAGAGAAAGTGGGAGTGGGAGTGGAGAAATGGGAGGAGGAAACAGAAACAGGGCAGCAGTGTATGAATACAGAGCAAGAGAAGATAATGTGAGAGGATCAGAGGAACAAGAGCCAAGAAGGAAATACAGAGGCGTGAGGCAGAGACCATGGGGCAAGTGGGCAGCCGAGATTAGAGACCCCTTCAAAGCCGCCAGAGTCTGGTTAGGCACCTTCGACACCGCCGAAGCCGCCGCCAGAGCCTACGACCAAGCCGCCCTCCGTTTCAGAGGCAACAAAGCCAAACTCAACTTCCCCGAAAACGTCACGCTCCTCCGCCACGCGCCACCGCAAAACACTCCTCCTCCTCCTCCTCCTTCTTCGCTCGTGTCTATTTCAACTTCAACCGATGCCATTGTTCACACTGAGCCTCTTATTAGTTTCCATGGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGATGGGTTTGTATGGGAATTTTCCGATGATGGATCCCAGTCTGATGGTTATGGCGTCAAGTGTGGCTTCTCATCTTCATCATTCTTTTTCGTCGTCAACGCAAGCTTCGCCGCCGTTCTTGTCTTCGTCTTCTGCGTTCGGTTCGAATGCTCAGTTGCCGGCGGCGTGGTCATCGGGTTCCGGTCACAGCTCTTCGTCGTCGGGATAA 1125 0.4729 MCIEKVANPQEKGNKVVDENRELELDKRINNSSSSALLPSSSMHMIFPGLNREREMSAMVSALTHVVSGEVPTGADDEYALPITRDMAYYGSSSSAMFSNDYVVGSGSSSIKRTREQDGVSFVDHFSSSSHGGASSTSPTTTIHTTVTRESSRESGSGSGEMGGGNRNRAAVYEYRAREDNVRGSEEQEPRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEAAARAYDQAALRFRGNKAKLNFPENVTLLRHAPPQNTPPPPPPSSLVSISTSTDAIVHTEPLISFHGSSSSSSSSSSSSMGLYGNFPMMDPSLMVMASSVASHLHHSFSSSTQASPPFLSSSSAFGSNAQLPAAWSSGSGHSSSSSG 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241693g00018 374 MobiDBLite consensus disorder prediction 256 277 - -
Stsc241693g00018 374 FunFam Ethylene-responsive transcription factor 2 192 251 - -
Stsc241693g00018 374 PRINTS Ethylene responsive element binding protein signature 216 232 IPR001471 GO:0003700|GO:0006355
Stsc241693g00018 374 PRINTS Ethylene responsive element binding protein signature 194 205 IPR001471 GO:0003700|GO:0006355
Stsc241693g00018 374 Gene3D AP2/ERF domain 192 252 IPR036955 GO:0003700|GO:0006355
Stsc241693g00018 374 ProSiteProfiles AP2/ERF domain profile. 193 250 IPR001471 GO:0003700|GO:0006355
Stsc241693g00018 374 CDD AP2 193 252 IPR001471 GO:0003700|GO:0006355
Stsc241693g00018 374 MobiDBLite consensus disorder prediction 124 162 - -
Stsc241693g00018 374 PANTHER DNA-BINDING DOMAIN 153 329 IPR044808 GO:0003700|GO:0009873
Stsc241693g00018 374 Pfam AP2 domain 193 242 IPR001471 GO:0003700|GO:0006355
Stsc241693g00018 374 SMART rav1_2 193 256 IPR001471 GO:0003700|GO:0006355
Stsc241693g00018 374 MobiDBLite consensus disorder prediction 124 168 - -
Stsc241693g00018 374 SUPERFAMILY DNA-binding domain 193 251 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241693g00018 Stsc-Chr241693 173103 175174 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241693g00018 180 260 AP2-EREBP Transcription Factor Family AT5G13330 67.816 1.20e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc241693g00018 AP2 4.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241693g00018 - - adu:107470342 403.29