Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241693g00017 ATGTGGTTCTCTCCACACACAACACAACCATATATAGCCAGCGCCGGCAAGGTGGCGAATCCTCAAGAGAAAGGAAACAAGGTTGTTGATGAGAACAGGGAATTGGAACTTGATAAGAGGATAAATAACAGTTCTTCTTCTGCATTATTGCCATCATCATCAATGCATATGATATTCCCAGGTTTGAATAGGGAGAGGGAGATGTCTGCCATGGTTTCAGCTTTGACCCATGTTGTCTCTGGTGAAGTTCCAACCGGTGCAGATGATGAATATGCACTTCCAATAACAAGGGATATGGCTTATTATGGTTCTTCTTCTTCAGCAATGTTTTCTAATGATTATGTTGTTGGAAGTGGCTCTTCTTCTATCAAGAGAACTAGGGAACAAGATGGTGTATCCTTTGTTGACCACTTCTCTTCTTCATCACATGGTGGAGCTTCTTCAACATCTCCTACTACTACTATTCATACAACAGTAACCAGAGAAAGTTCAAGAGAAAGTGGGAGTGGGAGTGGAGAAATGGGAGGAGGAAACAGAAACAGGGCAGCAGTGTATGAATACAGAGCAAGAGAAGATAATGTGAGAGGATCAGAGGAACAAGAGCCAAGAAGGAAATACAGAGGCGTGAGGCAGAGACCATGGGGCAAGTGGGCAGCCGAGATTAGAGACCCCTTCAAAGCCGCCAGAGTCTGGTTAGGCACCTTCGACACCGCCGAAGCCGCCGCCAGAGCCTACGACCAAGCCGCCCTCCGTTTCAGAGGCAACAAAGCCAAACTCAACTTCCCCGAAAACGTCACGCTCCTCCGCCACGCGCCACCGCAAAACACTCCTCCTCCTCCTCCTCCTTCTTCGCTCGTGTCTATTTCAACTTCAACCGATGCCATTGTTCACACTGAGCCTCTTATTAGTTTCCATGGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGATGGGTTTGTATGGGAATTTTCCGATGATGGATCCCAGTCTGATGGTTATGGCGTCAAGTGTGGCTTCTCATCTTCATCATTCTTTTTCGTCGTCAACGCAAGCTTCGCCGCCGTTCTTGTCTTCGTCTTCTGCGTTCGGTTCGAATGCTCAGTTGCCGGCGGCGTGGTCATCGGGTTCCGGTCACAGCTCTTCGTCGTCGGGATAA 1161 0.4772 MWFSPHTTQPYIASAGKVANPQEKGNKVVDENRELELDKRINNSSSSALLPSSSMHMIFPGLNREREMSAMVSALTHVVSGEVPTGADDEYALPITRDMAYYGSSSSAMFSNDYVVGSGSSSIKRTREQDGVSFVDHFSSSSHGGASSTSPTTTIHTTVTRESSRESGSGSGEMGGGNRNRAAVYEYRAREDNVRGSEEQEPRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEAAARAYDQAALRFRGNKAKLNFPENVTLLRHAPPQNTPPPPPPSSLVSISTSTDAIVHTEPLISFHGSSSSSSSSSSSSMGLYGNFPMMDPSLMVMASSVASHLHHSFSSSTQASPPFLSSSSAFGSNAQLPAAWSSGSGHSSSSSG 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241693g00017 386 MobiDBLite consensus disorder prediction 268 289 - -
Stsc241693g00017 386 Gene3D AP2/ERF domain 204 264 IPR036955 GO:0003700|GO:0006355
Stsc241693g00017 386 PANTHER DNA-BINDING DOMAIN 165 341 IPR044808 GO:0003700|GO:0009873
Stsc241693g00017 386 CDD AP2 205 264 IPR001471 GO:0003700|GO:0006355
Stsc241693g00017 386 MobiDBLite consensus disorder prediction 136 174 - -
Stsc241693g00017 386 FunFam Ethylene-responsive transcription factor 2 204 263 - -
Stsc241693g00017 386 ProSiteProfiles AP2/ERF domain profile. 205 262 IPR001471 GO:0003700|GO:0006355
Stsc241693g00017 386 MobiDBLite consensus disorder prediction 136 180 - -
Stsc241693g00017 386 Pfam AP2 domain 205 254 IPR001471 GO:0003700|GO:0006355
Stsc241693g00017 386 SUPERFAMILY DNA-binding domain 205 263 IPR016177 GO:0003677
Stsc241693g00017 386 SMART rav1_2 205 268 IPR001471 GO:0003700|GO:0006355
Stsc241693g00017 386 PRINTS Ethylene responsive element binding protein signature 206 217 IPR001471 GO:0003700|GO:0006355
Stsc241693g00017 386 PRINTS Ethylene responsive element binding protein signature 228 244 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241693g00017 Stsc-Chr241693 172694 175145 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241693g00017 192 272 AP2-EREBP Transcription Factor Family AT5G13330 67.816 2.40e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc241693g00017 AP2 4.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241693g00017 - - adu:107470342 396.741