Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241693g00007 ATGGAGTTCGACGAGTACGACTACTTGGAGAAGACGGTGGAGGACCATGACGACCGGGATTCCTCCAAGAAGACCAAGAAAGACAGCTCCGACAGGACCTACAGGAAACGCGACCAGCTCGACGACGATCTTGACGCTGCCGCCGATGACAAGCGCACCAAGAAGCACAGGGAAGACGAAGAGAACGGCTCCAAGAAGGATCGGGATGACCGCGATAGGGAGCGCTCCTCCCGAGACAAGGACCGCCACAGGCACCGCAGCAGTGACAGGGACAGAGAGAGAGACGGTGAGAGGAGCAGCCGAGACAGAGATAGAGATAGAGATAGAGACAGTGAAAGGAGCAGCAGGGACAGAGAGAAGGAGAGGGAGAAAAGCAAAGAGAGGGATAGGAGGGAGAGGAGAGAAAGGGATAGAGAGAAGGAGAAGGAGAAGGAGAACGAAAGGGAAAGGGAAAGAAAGGAGAAGGACAGAGAACGAGAGGAGAGGTCCAGGAGGAGCAGGTCTCGTTCGGAGCGAGACCGAGACAGAGAGAGGGAACGTGATTTTGACTCCAGAGATGGCCGGAGACACAGGGAAAAGAAAGAGGCTGTGGAGCCTGAGGCAGATCCAGAAAGGGATCAGAGAACTGTTTTTGCCTACCAGATGCCTTTGAAGGCAACGGAGAGGGATGTATATGAGTTCTTCTCTAAAGCTGGCAAGGTGAGGGATGTTCGTCTTATCATGGATAGGAACTCAAGAAGATCTAAAGGAGTTGGGTATATTGAATTTTATGATGTGATGTCAGTGCCAATGGCAATTGCTCTCTCTGGCCAACTTCTCCTTGGACAGCCTGTGATGGTTAAACCTTCTGAGGCTGAAAAGAACCTTGTTCAATCTAATACTACTAGTGGAGCTGCTGGTGCAGCAGGACCATATGGAGCTGTGGACAGGAAACTGTACGTAGGGAACCTTCACTTCAACATGACCGAGAGTCAACTGAGAGAGATTTTTGAGCCATTTGGTCCGGTGGAGCTTGTACAATTGCCTCTTGATTTGGAAACTGGACATTGCAAGGGTTTTGGGTTTGTTCAATTTGCCCATCTTGAGCATTCCAAGGCAGCTATTAGTTTAAATGGAAAACTGGAGATTGCTGGCAGGACTATCAAGGTCTCATCTGTAACTGATCATGTTGGAAGCCAAGATACAACTGCAAAATCTGCAGATTTCGATGATGATGAAGGTGGATTTGCTTTAAATGCTCAATCAAGAGCTTTGCTTATGCAGAAGCTGGATCGCTCTGGCATAGCTGCTAGCATTGGAGTTCTGCCAGTTGTGAATGGGTCGGCCCCTGTGCAGCAACAAGCTGTTAGCTTGCCTGTTGGTAATCCAGGCATAATAGCTGCACCAACTCTCCCAACACAACTTATGACTAACCCAGTTGCTGAACCTGTTGGAACCCCCAGCGAGTGTTTACTGTTGAAGAATATGTTTGATCCGGCCACTGAGACAGAACCAGATTTTGATTTAGACATTAAAGAGGATGTAGAAGAAGAGTGTTCTAAATTTGGGCGGGTGAAGCATATCTATGTTGACAAAAGAAGTGCAGGTTTTGTGTATCTGCGGTTTGAAACCGTGGAAGCAGCAAGTGCTGCTCAACGTGCAATGCACCTGAGGTGGTTTGCACGTAGATTAATTTCAGCTTTGTTCATGCAACCTGAGATGTATGAAGCGAAGTTTAAAGGCGAGGTTTGA 1731 0.4847 MEFDEYDYLEKTVEDHDDRDSSKKTKKDSSDRTYRKRDQLDDDLDAAADDKRTKKHREDEENGSKKDRDDRDRERSSRDKDRHRHRSSDRDRERDGERSSRDRDRDRDRDSERSSRDREKEREKSKERDRRERRERDREKEKEKENERERERKEKDREREERSRRSRSRSERDRDRERERDFDSRDGRRHREKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTSGAAGAAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVELVQLPLDLETGHCKGFGFVQFAHLEHSKAAISLNGKLEIAGRTIKVSSVTDHVGSQDTTAKSADFDDDEGGFALNAQSRALLMQKLDRSGIAASIGVLPVVNGSAPVQQQAVSLPVGNPGIIAAPTLPTQLMTNPVAEPVGTPSECLLLKNMFDPATETEPDFDLDIKEDVEEECSKFGRVKHIYVDKRSAGFVYLRFETVEAASAAQRAMHLRWFARRLISALFMQPEMYEAKFKGEV 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241693g00007 576 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 403 500 IPR029123 -
Stsc241693g00007 576 SUPERFAMILY RNA-binding domain, RBD 201 289 IPR035979 GO:0003676
Stsc241693g00007 576 NCBIfam splicing factor, CC1-like family 100 572 IPR006509 GO:0003723|GO:0005634|GO:0006397
Stsc241693g00007 576 Coils Coil 124 163 - -
Stsc241693g00007 576 MobiDBLite consensus disorder prediction 1 209 - -
Stsc241693g00007 576 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 505 557 IPR000504 GO:0003723
Stsc241693g00007 576 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 312 382 IPR000504 GO:0003723
Stsc241693g00007 576 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 277 IPR000504 GO:0003723
Stsc241693g00007 576 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 572 IPR006509 GO:0003723|GO:0005634|GO:0006397
Stsc241693g00007 576 CDD RRM1_RBM39_like 209 281 - -
Stsc241693g00007 576 MobiDBLite consensus disorder prediction 9 207 - -
Stsc241693g00007 576 Gene3D - 477 575 IPR012677 -
Stsc241693g00007 576 SUPERFAMILY RNA-binding domain, RBD 477 564 IPR035979 GO:0003676
Stsc241693g00007 576 SMART rrm1_1 483 560 IPR000504 GO:0003723
Stsc241693g00007 576 SMART rrm1_1 311 384 IPR000504 GO:0003723
Stsc241693g00007 576 SMART rrm1_1 209 281 IPR000504 GO:0003723
Stsc241693g00007 576 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Stsc241693g00007 576 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 388 IPR000504 GO:0003723
Stsc241693g00007 576 FunFam Splicing factor CC1-like 133 293 - -
Stsc241693g00007 576 Gene3D - 134 293 IPR012677 -
Stsc241693g00007 576 Gene3D - 294 393 IPR012677 -
Stsc241693g00007 576 FunFam Splicing factor CC1-like 294 399 - -
Stsc241693g00007 576 CDD RRM3_RBM39_like 481 563 - -
Stsc241693g00007 576 FunFam Splicing factor, CC1-like protein 477 576 - -
Stsc241693g00007 576 SUPERFAMILY RNA-binding domain, RBD 309 387 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241693g00007 Stsc-Chr241693 84059 89658 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241693g00007 207 374 Eukaryotic Initiation Factors Gene Family AT1G49760 30.233 4.56e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241693g00007 K13091 - gmx:100802446 680.633