LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc241693g00001	ATGCCTTTGAAGGCAACGGAGAGGGACGTATTTGAGTTCTTCTCTAAAGCTGGCAAGGTGAGGGATGTTCGTCTTATCATGGATAGGAACTCAAGAAGATCTAAAGGAGTTGGGTATGTTGAATTTTATGATGTGATGTCAGTGCCAATGGCGATTGCTCTCTCTTGCCAACTTCTCCTTGGACAGCCTGTGATGGTTAAACCTTCTGAGGCTGAAAAGAACCTTGTTCAATCTAATACTACTAGTGGAGCTGCTGGTGCAGCAGGACCATATGGAGCTGTGGACAGGAAACTGTACGTAGGGAACCTTCACTTCAACATGACCGAGAGTCAACTGAGAGAGATTTTTGAGCCATTTGGTCCAGTGGAGCTTGTACAATTGCCTCTTGATTTGGAAACTGGACATTGCAAGGGTTTTGGGTTTGTTCAATTTGGTCATCTTGAGCATTCCAAGGCAGCTCTGAGTTTAAATGGAAAACTGGAGATTGCTGGCAGGACTATCAAGGTCTCATCTGTAACTGATCATGTTGGAAGCCAAGATACAACTGCAAAATCTGCAGATTTCGATGACGATGAAGGTGGATTGGCTTTAAAAGCTCAATCAAGAGCTTTGCTTATGCAGAAGCTGGATCGCTCTGGCATAGCTTCTAG	650	0.4446	MPLKATERDVFEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSCQLLLGQPVMVKPSEAEKNLVQSNTTSGAAGAAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVELVQLPLDLETGHCKGFGFVQFGHLEHSKAALSLNGKLEIAGRTIKVSSVTDHVGSQDTTAKSADFDDDEGGLALKAQSRALLMQKLDRSGIAS	216

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc241693g00001	216	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	96	174	IPR000504	GO:0003723
	Stsc241693g00001	216	Pfam	linker between RRM2 and RRM3 domains in RBM39 protein	189	213	IPR029123	-
	Stsc241693g00001	216	Gene3D	-	88	188	IPR012677	-
	Stsc241693g00001	216	SUPERFAMILY	RNA-binding domain, RBD	95	173	IPR035979	GO:0003676
	Stsc241693g00001	216	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	2	54	IPR000504	GO:0003723
	Stsc241693g00001	216	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	98	168	IPR000504	GO:0003723
	Stsc241693g00001	216	PANTHER	SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED	1	215	IPR006509	GO:0003723\|GO:0005634\|GO:0006397
	Stsc241693g00001	216	CDD	RRM1_RBM39_like	1	67	-	-
	Stsc241693g00001	216	SMART	rrm1_1	97	170	IPR000504	GO:0003723
	Stsc241693g00001	216	SMART	rrm1_1	1	67	IPR000504	GO:0003723
	Stsc241693g00001	216	SUPERFAMILY	RNA-binding domain, RBD	2	75	IPR035979	GO:0003676
	Stsc241693g00001	216	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	1	71	IPR000504	GO:0003723
	Stsc241693g00001	216	Gene3D	-	1	81	IPR012677	-
	Stsc241693g00001	216	NCBIfam	splicing factor, CC1-like family	1	215	IPR006509	GO:0003723\|GO:0005634\|GO:0006397
	Stsc241693g00001	216	FunFam	Splicing factor CC1-like	79	185	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc241693g00001	Stsc-Chr241693	2406	6076	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc241693g00001	6	160	Eukaryotic Initiation Factors Gene Family	AT1G49760	29.936	1.92e-12	63.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc241693g00001	K13091		-	gmx:100802446	383.645