Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241692g00033 ATGGACATAGATTCATCAGGAGGCTCATCAAATTGGCTATATGATTATGGCTTTGATCACATCTCTGTAGCTGACTTCATGGCTCCAGACTCTGCTGCTTTCACCTGGGTGCCTCAACCTCAGCATCACACCAATTTCAAGCCTCTTTCTTCCAATATGAGCTTAGAAATGGAATACTCAATGGATTCAATTGTGCTGGAAGGTGGCCCTTCAAAGCGGTTGAGGACTGAATCATGTGCATCTGGAACGAAGGCATGTCGAGAGAAATTGCGAAGGGACAAACTGAATGAGAGGTTTCTGGAACTGAGTTCCATCTTGGAGCCTGGTAGCAGGCAGCCCAAAACCGACAAGGTTGCCATATTAAGTGATGCCGTCCGAGTGGTAAACCAATTAAGAGATGAAGCACAGAAACTCAAGGAAATGAACTATGAAATGCTTGAAAAAATTAAAGACCTCAAGGCCGAGAAGAATGAGCTTCGTGACGAGAAAAATAGGCTGAAGGTAGAGAAAGAGAAGCTGGAGCAGCAGTTCAAGATGGCAAATGTTCAGCCAAGCTTTGTCCCCCATGCTCCACCAGCCGCGAAAGCGCAAGGTGCTAGCCAGAAGCTGATACCCTTCATAGGTTACCCTGGCATAGCCATGTGGCAGTTTATGCCACCTGCTGCAGTTGATACCTCAAAGGATCATCTCCTTCGTCCACCAGTGGCATAA 711 0.4669 MDIDSSGGSSNWLYDYGFDHISVADFMAPDSAAFTWVPQPQHHTNFKPLSSNMSLEMEYSMDSIVLEGGPSKRLRTESCASGTKACREKLRRDKLNERFLELSSILEPGSRQPKTDKVAILSDAVRVVNQLRDEAQKLKEMNYEMLEKIKDLKAEKNELRDEKNRLKVEKEKLEQQFKMANVQPSFVPHAPPAAKAQGASQKLIPFIGYPGIAMWQFMPPAAVDTSKDHLLRPPVA 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241692g00033 236 PANTHER BHLH TRANSCRIPTION FACTOR 4 236 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Stsc241692g00033 236 Coils Coil 121 183 - -
Stsc241692g00033 236 SMART finulus 85 137 IPR011598 GO:0046983
Stsc241692g00033 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 71 144 IPR036638 GO:0046983
Stsc241692g00033 236 CDD bHLH_AtILR3_like 84 160 - -
Stsc241692g00033 236 FunFam Transcription factor bHLH104 82 164 - -
Stsc241692g00033 236 Gene3D - 83 159 IPR036638 GO:0046983
Stsc241692g00033 236 Pfam Helix-loop-helix DNA-binding domain 83 131 IPR011598 GO:0046983
Stsc241692g00033 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 79 131 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241692g00033 Stsc-Chr241692 181695 183655 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241692g00033 15 236 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51070 53.680 1.14e-73 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc241692g00033 HLH 3.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241692g00033 - - gmx:100803143 345.125