Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241692g00027 ATGCCAAAGTCTGGATGTGAAGATCCTCGCTGGCCTCATAAAGACGACTTGTATTTTCCTTCTCAGAGCAGGAAACTTGATCTCCCTTTGTGGGCTTTTTGTGCTGATGAGCGGGTTGATTACTGTGCTGCGAGCAGATCAGCTCAAAGTAAGCCTGCCTTTGTCAGAGGAACAAAAGGAAATATTCTTTCAGTGGTTAGAATAAATGCATGTGTAGTCAAGGATCAGGGATCATTGATGTCTGAGTCACGCCACAAGTCGCGAGGGAAAGATAGATATCATTCAAGGTCTACACGCCCTCAATCTTCAACCAGTGATAGCAGGAGATCGTCAATTGAAGAGGATTCCCATTCAAAATCTGCTAGTGACCGAGGTTCTCGTCGGAGCATGGAATTTGTTAATGTCCCTAAAGATCATCTCTGTACTGTTAAGGATTTGCAGTTACATTTTGGTGACTGGTATTATCTTGATGGTTCTGGTCGTGAAAGAGGGCCATCATCATTTTTAGAACTGCAGCATTTAGTAGATCAAGGAATTATAAAAAAGCTTAGCAGCGTGTTTAGGAAAAGTGATAAACTATGGGTTCCTGTTACCTCTGCTTCAGAAGTTTCTGACGTCAGTCTCGAGAGCCACCAAGAAAGCAGTTCAACATCTGGAGTTCAATCAAAGCATATTCAAGATGTCTCTGTTGTTGAACCTTGTGCAAATCTAAGTTTGTTTAACAGAATACACCCTCAGTTTGTTGGTTACACTCGAGGGAAGCTGCATGAACTGGTAATGAAAACATATAAGAGTCGGGAATTTGCTGCAGCTATAAATGAGGTCTTAGATCCCTGGATCAATGCAAGACAACCAAAGAAAGAAACTGAGAAGCAAATTTATTGGAAATCAGATGGTGATGCACGTGCTACAAAAAGAGCCCGGATGCTGGTTGATGGTGAGGAAGACAGTGAGCTTGAAGATGATCCTACTATTGAGAAGGATGAAACCACGTTTGAGGATCTATGTGGTGATGCTACTTTCATTGGAGAAGCTATTGGTCTTACTGATTCTGAGATGGCAAGCTGGGGCTTATTGGATGGTCGGATGTTGGCAAGAATATTCCATTTTCTAAGATCTGATTTGAAGTCCCTTGTTTTTGCATCAATAACTTGCAAGCATTGGAGAACAGCTGTACGGTTTTACAAAGAAGTCTCAAGACATGTCAATATGTCATCAATGGGTCACTCCTGCACTGATTCCACGTTGTTGAACATTATGAATGCTTATGACAAAGACAAGATCAGTTCTTTGACTCTAATGGGTTGTAAGAATATTTCGGCTGACACCCTTGAGAAAATTCTTCTCTCTTTTCCTGGTTTGTCTACCATAGACATTAGAGGGTGCAGCCAGTTTGAAGAGCTGACTCCTAAATTTGTCCATGTGAAATGGATTAAGAGCCGTTCACACATTGGTAGATTTTTAGAGGAGCCTCATAAAATCAGAAGCCTTAAGCACATTACAGATCAAAGTTCATCTGTTTCAAAATCCAGCAGTTTAGGTATGGATGATTTTGGCCAGTTGAAGGATTATTTTGATAGTGTGGATAAGAGAGACTCAGCAAAGCAGTTGTTCCGTCGAAACTTATACAAGCGGTCAAAACTATACGATGCTAGAAGGTCCTCTTCCATTCTATCAAGGGATGCTCGTACAAGACGGTGGGCAATTAAGAAATCTGAAAGTGGTTATAAGAGGATGGAGGAATTCCTCGCTTCAAGACTGAGAGATATTATGAAGACAAACACCTGTGATTTTTTTGTGCCTAAGGTTGCAGAAATTGAGGCTAGAATGAAAAATGGATATTATATTGGCCGTGGCTTGAGCTCTGTCAAGGAAGACATCAGTAGAATGTGTCGCGATGCAATAAAGGCAAAGAATCGGGGTGATGCTAATGACATGAATCGTATGATCACATTGTTTATTCAGCTTGCAACACTGTTGGAAGAGAGCTCTATATCTGTGCATGACAGAGATGCACTATCCTCAAAGTATAAGAAAAATAGATTGGTAACTGACAGGAAGTATAGGAGTAATGGAACACATGGATTGGATAATATGGAATATACCTCTGATCGGGAAATTAGGAGGCGCTTATCTAAGTTGAATAAGAAATCTATGGATTCAGAGAGTGAAACATCTGATGATCTTGATCGGTCTTATGAAGATGGCAAGAGTGACAGTGATACTACAAGCTCTGAGGCCGAAAGTGATGACCAAGGACATTCAGAAAATCTATTTGGGGAGTCAAGGGGAGATGGACACTTCACACCAGAAGGAGATTTGAATTTTATAACCGATGATCGTGAGTGGGGTGCTCGAATGACAAAAGCCAGCCTTGTTCCCCCTGTTACTCGGAAATATGAAGTCATTGATCAATATGTCATTGTAGCTGATGAGGAAGATGTGCAAAGGAAGATGCGGGTTTCACTACCAGATGACTATGCAGAAAAGTTGAGTGCACAAAAGAGTGGTACAGAGGAGTCAGATATGGAACTTCCTGAAGTCAAGGATTATAAACCTAGAAAGCAGCTTGGGAATGAAGTTATTGAGCAAGAAGTGTATGGAATTGATCCTTATACGCATAATCTTTTGCTTGATTCGATGCCAGAGGAGTTAGATTGGTCCCTTCAGGACAAACATTTGTTCATAGAAGATGTGCTCCTTCGAACATTGAATAAGCAAGTCAGGAATTTTACCGGAAGTGGTAGCACTCCGATGAGCTATTCCCTGCAGCCTGTTATTGAAGAGATTAAGAGATGTGCAGAGGAGGGCTGTGATGCACGAACAGTTAAAATGTGTCAAGGTATTCTAAAGGCCATAGACAGTCGTCCAGATGACAAATATGTAGCTTATAGAAAGGGGCTTGGTGTTGTTTGCAACAAGGAAGAAGGCTTTTGCGAAGATGATTTTGTTGTGGAGTTTTTGGGAGAGGTTTATCCTGTGTGGAAGTGGTTTGAGAAACAAGATGGGATTAGATCTCTGCAGAAAAATAGTACAGATCCGGCACCTGAGTTCTATAACATCTACCTTGAGAGACCAAAGGGTGACGCTGATGGGTATGACTTAGTCGTTGTTGATGCCATGCATAAGGCTAATTATGCTAGTCGAATATGTCATTCTTGCCGACCAAATTGTGAAGCCAAAGTTACTGCTGTTGATGGTCATTATCAAATTGGGATTTATAGTGTTCGAAAAATTCAACCGGGTGAGGAGATCACTTTTGATTACAATTCTGTGACAGAGAGCAAGGAGGAATATGAAGCATCTGTTTGTTTATGCGGAAGTCAAGTATGCCGAGGCAGCTATCTCAATCTAACTGGTGAAGGGGCTTTCCAAAAGGTTTTGAAGGACTCGCATGGAATTCTTGATCGGCATTATTTGATGCTAGAAGCTTGTGAATTGAATTGTGTGTCTGAAGAGGACTATAATGACTTGGGAAGAGCTGGTTTAGGCAGCTGTTTGCTTGAAGGCCTGCCAGATTGGCTTGTTGCATATGCAGCTCGCCTGGTGAGGTTCATCAATTTTGAAAGAACCAAACTTCCCGAGGAAATTCTAAAGCATAACCTGGACGAGAAAAGAAAATATTTTTCTGATATATGCCTTGAAGTTGAAAGGAGCGATGCTGAGGTTCAGGCTGAGGGTGTTTACAACCAAAGGCTTCAGAATCTTGCCGTCACTCTTGACAAGGTAAGGTATGTTATGCGATGTATTTTTGGCGATCCCCGAAAAGCACCACCTCCTCTTGAGAAGCTCAGTCCTGAAGAAGCTGTTTCCTTTCTCTGGAAAGGAGAGGGTTCATTTGTTGAGGAGCTTCTTCAGTTGAGGGATGAGGTCCGAGATCTTCCTTGTACATACAAATGTCGGCATGATGCTGCTGCTGACTTAATCCATATTTACGCATATACCAAGTACTTTTTTAGAATACGGGCTTATCAAACCATTACTTCACCGCCTGTCTATATTAGTCCACTTGACTTAGGTCCCAAGTACGCTAACAAGTTGGGAGCAGGATTTCAGGAGTATCGGAAAATATATGGTGAAAATTATTGTTTAGGGCAGTTGATTTTTTGGCACAATCAGAGTAATGTGGATCCAGACCGTAGCCTTGGTAGAGCCAGCAGGGGTTGTCTGTCTTTACCAGACATCAGTTCCTTTTATGCCAAGGCTCTGAAGCCATCAAAGCATCGAGTTTATGGCCCAAGGACCGTAAGATCAATGCTTGCAAGAATGGAGAAGCAACCTCAGAGACCTTGGCCCAAGGACCAGATATGGTCGTTCAAAAGTTTTCCCAAATTCTTTGGTAGCCCAATGTTAGATGCTGTAATAAATAACATACCACTGGACAGGGAGATGGTTCATTGGTTGAAGCACAGACCTGCCATATACCAGGCCATGTGGGATCGTTAA 4446 0.419 MPKSGCEDPRWPHKDDLYFPSQSRKLDLPLWAFCADERVDYCAASRSAQSKPAFVRGTKGNILSVVRINACVVKDQGSLMSESRHKSRGKDRYHSRSTRPQSSTSDSRRSSIEEDSHSKSASDRGSRRSMEFVNVPKDHLCTVKDLQLHFGDWYYLDGSGRERGPSSFLELQHLVDQGIIKKLSSVFRKSDKLWVPVTSASEVSDVSLESHQESSSTSGVQSKHIQDVSVVEPCANLSLFNRIHPQFVGYTRGKLHELVMKTYKSREFAAAINEVLDPWINARQPKKETEKQIYWKSDGDARATKRARMLVDGEEDSELEDDPTIEKDETTFEDLCGDATFIGEAIGLTDSEMASWGLLDGRMLARIFHFLRSDLKSLVFASITCKHWRTAVRFYKEVSRHVNMSSMGHSCTDSTLLNIMNAYDKDKISSLTLMGCKNISADTLEKILLSFPGLSTIDIRGCSQFEELTPKFVHVKWIKSRSHIGRFLEEPHKIRSLKHITDQSSSVSKSSSLGMDDFGQLKDYFDSVDKRDSAKQLFRRNLYKRSKLYDARRSSSILSRDARTRRWAIKKSESGYKRMEEFLASRLRDIMKTNTCDFFVPKVAEIEARMKNGYYIGRGLSSVKEDISRMCRDAIKAKNRGDANDMNRMITLFIQLATLLEESSISVHDRDALSSKYKKNRLVTDRKYRSNGTHGLDNMEYTSDREIRRRLSKLNKKSMDSESETSDDLDRSYEDGKSDSDTTSSEAESDDQGHSENLFGESRGDGHFTPEGDLNFITDDREWGARMTKASLVPPVTRKYEVIDQYVIVADEEDVQRKMRVSLPDDYAEKLSAQKSGTEESDMELPEVKDYKPRKQLGNEVIEQEVYGIDPYTHNLLLDSMPEELDWSLQDKHLFIEDVLLRTLNKQVRNFTGSGSTPMSYSLQPVIEEIKRCAEEGCDARTVKMCQGILKAIDSRPDDKYVAYRKGLGVVCNKEEGFCEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNSTDPAPEFYNIYLERPKGDADGYDLVVVDAMHKANYASRICHSCRPNCEAKVTAVDGHYQIGIYSVRKIQPGEEITFDYNSVTESKEEYEASVCLCGSQVCRGSYLNLTGEGAFQKVLKDSHGILDRHYLMLEACELNCVSEEDYNDLGRAGLGSCLLEGLPDWLVAYAARLVRFINFERTKLPEEILKHNLDEKRKYFSDICLEVERSDAEVQAEGVYNQRLQNLAVTLDKVRYVMRCIFGDPRKAPPPLEKLSPEEAVSFLWKGEGSFVEELLQLRDEVRDLPCTYKCRHDAAADLIHIYAYTKYFFRIRAYQTITSPPVYISPLDLGPKYANKLGAGFQEYRKIYGENYCLGQLIFWHNQSNVDPDRSLGRASRGCLSLPDISSFYAKALKPSKHRVYGPRTVRSMLARMEKQPQRPWPKDQIWSFKSFPKFFGSPMLDAVINNIPLDREMVHWLKHRPAIYQAMWDR 1481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241692g00027 1481 Pfam Protein SET DOMAIN GROUP 2 C-terminal 1101 1286 IPR045606 -
Stsc241692g00027 1481 Pfam Protein SET DOMAIN GROUP 2 C-terminal 1284 1481 IPR045606 -
Stsc241692g00027 1481 Gene3D Ribonuclease Inhibitor 350 508 IPR032675 -
Stsc241692g00027 1481 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR3 1284 1481 - -
Stsc241692g00027 1481 SUPERFAMILY F-box domain 362 412 IPR036047 GO:0005515
Stsc241692g00027 1481 CDD SET_SETD2-like 964 1112 - -
Stsc241692g00027 1481 ProSiteProfiles SET domain profile. 951 1090 IPR001214 GO:0005515
Stsc241692g00027 1481 SUPERFAMILY SET domain 965 1113 IPR046341 -
Stsc241692g00027 1481 MobiDBLite consensus disorder prediction 712 774 - -
Stsc241692g00027 1481 MobiDBLite consensus disorder prediction 712 761 - -
Stsc241692g00027 1481 SMART set_7 956 1096 IPR001214 GO:0005515
Stsc241692g00027 1481 Pfam SET domain 1023 1090 IPR001214 GO:0005515
Stsc241692g00027 1481 Gene3D SET domain 924 1121 IPR046341 -
Stsc241692g00027 1481 MobiDBLite consensus disorder prediction 108 129 - -
Stsc241692g00027 1481 MobiDBLite consensus disorder prediction 79 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241692g00027 Stsc-Chr241692 150948 160066 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241692g00027 1036 1115 Su(var)3-9 homologs AT1G73100 31.461 2.23e-06 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc241692g00027 SET 1.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241692g00027 K22748 - gmx:100776205 2462.18