Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241692g00025 ATGAAAGCTGAGCTAAAAGGAGCATCCTCCATCTCCTTCCAAAACCACGCCCTCTTCAACACGGCACCACACAACACCACCACTTCATCATCACTCACCGGAGCACTCAAAGGCTGTCTCGGAAGCCTCGACGGCGCCTGCATCGAGAAGCTTCTTCTCCACTGCGCAAGCGCCTTGGAGAGCAACGATGTAACCTTAGCACAGCAAGTCATGTGGGTTCTCAACAACGTTGCTTCACCAACCGGTGACACAAACCAAAGGCTCACTTCATGGTTCCTCAGGGCACTCATCTCTAGGGCTTCAAGGATTTGCCCTACAGCCTTGAGCTTCAAGGGAAGCAGTAGCAACGCCATTCAGAGGAGGTTGATGACGGTTACAGAGCTAGCAGGGTACGTGGATCTCATTCCATGGCACAGGTTTGGATTTTGTGCTTCGAATAATGAGATTTTCAAGGCAATTTTAGGGTTCCAAAGGGTACATATCTTAGACTTTAGCATCACTCATTGTATGCAATGGCCTACTTTCATTGATGCATTGGCCAAAAGCCCTGAAGGCCCTCCTTCACTTAGAATCACCGTCCCATCTTTTAGGCCACCAGTGCCTCCATTGGTGAATGTGTCAACTCATGAGGTGGGTCTTCGGCTAGCGAATTTCGCAAAGTTTAGGGATGTCCCTTTTGAATTCAATGTCATAGGGAATAATTTAGGTCCCTTAAGCAATGAATCAACTAGTTTTCATTTTGAGTCATTGCTGAGTCTCTTGAATCCTAGTGTCCTAAACCTTAGGGATGATGAGGCTTTGGTCATAAATTGTCAAAACTGGCTTCGTTATTTGTCTGATGACAGAAAGGGAAACCACAGAGGCCTTTCTCTCCGAGATGCTTTCTTGAATTTAGTTAAAGGTCTTAACCCTCAGATTGTGACTTTCCTGCCTAAGGACAGTTGCCAGAGGACGGAGTTCGAATCCGACATTGGGCAGAAGATTGAGAACATCATAGGATATGAAGGGAACCAGAGGGTAGAGAGGTTGGAGTCAGGGATGCAGATGTGCCAGAGAATGAAGAATGCTGGTTACTTGAGCCTCCCATTCTGTGATGAAACGGTTATGGAAGTTAAGGGCTTGCTTGATGAGCATGCTAGTGGATGGGGGATGAAGAGGGAAGAAGGCATGTTGGTTCTCACATGGAAGGGAAACAGCTGTGTCTATGCCACTTCTTGGGTCCCCAGTGAAACCAGGGATGAAGAAATCATTTTCTGA 1257 0.4702 MKAELKGASSISFQNHALFNTAPHNTTTSSSLTGALKGCLGSLDGACIEKLLLHCASALESNDVTLAQQVMWVLNNVASPTGDTNQRLTSWFLRALISRASRICPTALSFKGSSSNAIQRRLMTVTELAGYVDLIPWHRFGFCASNNEIFKAILGFQRVHILDFSITHCMQWPTFIDALAKSPEGPPSLRITVPSFRPPVPPLVNVSTHEVGLRLANFAKFRDVPFEFNVIGNNLGPLSNESTSFHFESLLSLLNPSVLNLRDDEALVINCQNWLRYLSDDRKGNHRGLSLRDAFLNLVKGLNPQIVTFLPKDSCQRTEFESDIGQKIENIIGYEGNQRVERLESGMQMCQRMKNAGYLSLPFCDETVMEVKGLLDEHASGWGMKREEGMLVLTWKGNSCVYATSWVPSETRDEEIIF 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241692g00025 418 ProSiteProfiles GRAS family profile. 39 407 IPR005202 -
Stsc241692g00025 418 Pfam GRAS domain family 49 312 IPR005202 -
Stsc241692g00025 418 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 314 401 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241692g00025 Stsc-Chr241692 139487 140830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241692g00025 36 408 GRAS Transcription Factor Family AT3G49950 42.402 2.54e-100 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc241692g00025 GRAS 1.1e-55 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241692g00025 - - gmx:100802093 690.263