Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241692g00016 ATGTTGGGGAAAGGGAACAGCAAAGGGGACGGCGGATCGAAGTCGGTTGCAAAAATCCTGGCGAAATGGAAAGAGTACAACGCGCAGCTTGATTCGAGCAGCGACGCCGATAAGCCGATTCGGAAGGTTCCGGCGAAGGGATCGAAGAAGGGGNNNNNNNNNNGTATGAAAGGAAAAGGTGGACCTGAGAATTCAAGGTGTAACTACAGGGGAGTGAGGCAGAGGACTTGGGGCAAATGGGTTGCTGAAATTCGAGAACCTAACAGAGGTAGCAGGTTATGGCTTGGCACTTTCCCCACCGCCATTGGCGCTGCTCTTGCCTATGATGAAGCTGCAAGAGCTATGTACGGTTCTTGTGCTCGCCTCAACTTCCCCAATGTCTCTGTCTCAAGTTTCTCTCACCATTCTTCTTCTTCTTCTCCTCCTTCCCCTGCAAACCACCACCATGTCCATGAAGATGATCATCTCATTTCGTTATCTTTAAGTGTAAAGCATGAATCTGGGGCCACTAACTCCCCTCCTTCATCCTCCTGA 534 0.4963 MLGKGNSKGDGGSKSVAKILAKWKEYNAQLDSSSDADKPIRKVPAKGSKKGXXXXMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAIGAALAYDEAARAMYGSCARLNFPNVSVSSFSHHSSSSSPPSPANHHHVHEDDHLISLSLSVKHESGATNSPPSSS 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241692g00016 177 MobiDBLite consensus disorder prediction 146 160 - -
Stsc241692g00016 177 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 10 151 - -
Stsc241692g00016 177 MobiDBLite consensus disorder prediction 32 65 - -
Stsc241692g00016 177 SUPERFAMILY DNA-binding domain 68 125 IPR016177 GO:0003677
Stsc241692g00016 177 CDD AP2 67 126 IPR001471 GO:0003700|GO:0006355
Stsc241692g00016 177 FunFam Ethylene-responsive transcription factor 2 67 126 - -
Stsc241692g00016 177 Gene3D AP2/ERF domain 68 127 IPR036955 GO:0003700|GO:0006355
Stsc241692g00016 177 ProSiteProfiles AP2/ERF domain profile. 68 125 IPR001471 GO:0003700|GO:0006355
Stsc241692g00016 177 MobiDBLite consensus disorder prediction 130 145 - -
Stsc241692g00016 177 MobiDBLite consensus disorder prediction 130 177 - -
Stsc241692g00016 177 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700|GO:0006355
Stsc241692g00016 177 PRINTS Ethylene responsive element binding protein signature 91 107 IPR001471 GO:0003700|GO:0006355
Stsc241692g00016 177 Pfam AP2 domain 67 117 IPR001471 GO:0003700|GO:0006355
Stsc241692g00016 177 MobiDBLite consensus disorder prediction 163 177 - -
Stsc241692g00016 177 SMART rav1_2 68 131 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241692g00016 Stsc-Chr241692 75024 76099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241692g00016 12 125 AP2-EREBP Transcription Factor Family AT2G40350 63.559 2.85e-48 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc241692g00016 AP2 1.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241692g00016 - K09286 adu:107462080 259.225