Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241692g00012 ATGGTCCCTTATCCACTGAGAACTGGTCCTAATTGTGGTGACCCCATATACTTTAACTTCACCTGCAACAACTCAACAGGCACACTAATCTTCTCTACTACTACTTCCATTGGCACTCATCATGTAGTTACTAACATGGATGTAGATTCTAGAACATTTGACATCAAGGTGGATCCTTCAACCACTTACTGTGGACACGAGAGATTTGTTAGTGGTACTAACAAAACTCTGCAGATTCAATTTCCATATAAGGTGACCAATGCTTGCCTTGCCCAAGATGAAGTACAAGTTACTTGGCTACCGCCACGCGAACCAATTTGCACTGACTCTGTAGACTGTGAGGGTTGGAAACATTCACGGTGCAAAAGAACAAGAAATGAAAAGAGGTGTATTTGTGATACAGATTATCACTGGGATGGTGTTTCCCTCCAATGTATTGAAGGAAGTGAAGGAATCTCAAAAACTCATATACCTTTGATTCTTGGGGTAACTTTTTCAATTGTGGTTGTTCTAGCTAGTGCAATCACTTTTGTCTTGTGGAAAAGGAAAATAATTCCAAGGAAAGATAAGGTAAATAATAAGAGATACCGAGAGCATTTGAAGGATTGGAAATTAGGAGAACAAGACAATGAAGGTATAGAGGTGCCATACTTTGATTTTGAGAGCATACTAGCAGCCACAGAAAACTTCTCACATGCCAATAAGCTTGGACAAGGTGGATATGGGCCAGTCTACAAGGGTAAGCTTCAAAGTGGTGAAGTTGTTGCCATTAAGAGGCTTTCCCATGTTTCATCTCAAGGGTTAGAGGAATTTAAGAATGAAGTTGTTTTGATAGCCAAACTTCAGCATCGAAATCTGGTTAGACTAAGGGGATATTGCATCGATGAAAATGAAAAGATTTTATTATATGAATATATGCACAACAAGAGTTTAGACTCGCTTATATTTGATCCGGCGAAAAGTCCACTTCTAGATTGGAAAATGCGGTTTGATATAGTTCTAGGAGTTGCACGAGGGATGCTTTATCTCCACCAAGATTCTAGGTTAAGAGTAATTCATCGAGATTTAAAAACCAGCAATATTCTTCTAGACGAAGAGATGCAACCGAAAATCTCAGATTTTGGATTGGCAAAAATAGTAGGAGGCAAAGAAACAGAAGCAAATACAGAGAGAGTAGTGGGAACTTATGGATATATCTCTCCTGATGGACTTTTCTCAACCAAATCAGACGTTTTCAGCTTTGGTATAGTTGTGCTTGAAATTATCAGCGGCAAAAAGAACAAAGGATTTTATCAATCCAACGAATTTTCAAGCCTTATGGGTTATACATGGAAACTATTGACAGAGGATAAGTTGCTCGAGTTAATGGACATATCGGTAAAAGAAAGTTGCAATCCAAATGAGTTCATGAGGTGTGCACAAATAGGACTGTTGTGTGTACAAAATGATCCACATGATCGACCAAGCATGTCAGATATTGTGATACTTCTTGTTAGTGAGAATGCAACCATTCCATATCCAAAACAACCAACTTATTTTGGGAGCAGAGGCCTAGTTTCTACCACAACTAAACCAGAAATAAGCATGCTGTTTGATACTACTAGTACCATTCAACAAGGCCGATAG 1626 0.3881 MVPYPLRTGPNCGDPIYFNFTCNNSTGTLIFSTTTSIGTHHVVTNMDVDSRTFDIKVDPSTTYCGHERFVSGTNKTLQIQFPYKVTNACLAQDEVQVTWLPPREPICTDSVDCEGWKHSRCKRTRNEKRCICDTDYHWDGVSLQCIEGSEGISKTHIPLILGVTFSIVVVLASAITFVLWKRKIIPRKDKVNNKRYREHLKDWKLGEQDNEGIEVPYFDFESILAATENFSHANKLGQGGYGPVYKGKLQSGEVVAIKRLSHVSSQGLEEFKNEVVLIAKLQHRNLVRLRGYCIDENEKILLYEYMHNKSLDSLIFDPAKSPLLDWKMRFDIVLGVARGMLYLHQDSRLRVIHRDLKTSNILLDEEMQPKISDFGLAKIVGGKETEANTERVVGTYGYISPDGLFSTKSDVFSFGIVVLEIISGKKNKGFYQSNEFSSLMGYTWKLLTEDKLLELMDISVKESCNPNEFMRCAQIGLLCVQNDPHDRPSMSDIVILLVSENATIPYPKQPTYFGSRGLVSTTTKPEISMLFDTTSTIQQGR 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241692g00012 541 ProSitePatterns Serine/Threonine protein kinases active-site signature. 351 363 IPR008271 GO:0004672|GO:0006468
Stsc241692g00012 541 CDD STKc_IRAK 236 494 - -
Stsc241692g00012 541 Gene3D Phosphorylase Kinase; domain 1 190 305 - -
Stsc241692g00012 541 Pfam Protein kinase domain 232 494 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241692g00012 541 ProSiteProfiles Protein kinase domain profile. 230 504 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241692g00012 541 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 132 537 - -
Stsc241692g00012 541 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 195 305 - -
Stsc241692g00012 541 SUPERFAMILY Protein kinase-like (PK-like) 212 515 IPR011009 -
Stsc241692g00012 541 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 306 505 - -
Stsc241692g00012 541 Gene3D Transferase(Phosphotransferase) domain 1 306 504 - -
Stsc241692g00012 541 SMART serkin_6 230 504 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241692g00012 Stsc-Chr241692 61298 63675 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241692g00012 147 513 Receptor kinase-like Gene Family AT4G05200 50.535 1.44e-121 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc241692g00012 Pkinase 5.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241692g00012 - - adu:107461924 699.123