Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241692g00008 ATGTGCTTCTTGATGAAGTCACACAAACCAAGCTTTCTCCTTCTCAAGTCTTGTTTAAAGGTGCCTCACTCTCTCAAATTCCACGCTCACCGCATCATGTTGAAGATGCAGGGAGAGAGAAATAGAAAGAGGTTGGAGAGAAAAGGAAAACTAGAAGAGGAAGAAGACAGAGACTTGGTTCACAGAATGGCAAAACTCAATGTTCCATATGCTGTATTCCAATATATATACTACAAGAATAAAATTAAGAGAAATCGAGGGCGATTTTATGACAGTGAAAGGCATGTGAAGGATTTGATGGAGGTTGAGGGATTAGAAGAAAAAGACCATGAAGGCATAGAGGTGCCTTATTTTGATTTTGAGAGCATGCAAATAGCAACAGATAACTTCTCTGATGCAAATAAACTTGGAAGAGGTGGTTATGGACCGGTCTATAAGGGTAAGCTCCAAGATGGTGAAGTTGTTGCAGTAAAACGGCTTTCAAGTTTTTCTTCACAAGGCTTAATAGAGTTTAAGAATGAGGTTGTTTTGATAGCCAAACTACAACATCGAAATCTTGTTAGGCTAAGGGGCTATTGCATCAAAGGAGACGAAAAGATTTTACTTTATGAGTATATGCCTAACAAAAGCTTAGACTCATTCATTTTCGATCCCGAACAAAGTGTACATTTGGATTGGCAAATGAGGTTTGACATCATTTTAGGAGTTGCTCGAGAAATATTATACCTACATCAAGACTCCAGACTAAGAGTAATCCATCGAGATTTAAAAACTAGCAACATTCTTCTAGATAAATTGATGCAACCAAAAATTTCGGATTTCGGATTGGCAAGAATAGTACGAAGCAAAGAGAATGAGGCGAATACAGAAAGAGTGGTTGGTACCTATGGATATATGTCTCCTGAATATGCATTAGATGGACTCTTTTCAACAAAATCCGATGTTTTCAGCTTTGGTATAGTGGTACTAGAAATTATAAGTGGGAAAAGAAACACAGGATTTTATCAATCCAGCCAGGTTCCAATAAGCCTTTTAGGCTACGCGTGGAAACAGTGGACAGAGAATAAGTTGATAGATATAATGGAGATAATTTAG 1095 0.3772 MCFLMKSHKPSFLLLKSCLKVPHSLKFHAHRIMLKMQGERNRKRLERKGKLEEEEDRDLVHRMAKLNVPYAVFQYIYYKNKIKRNRGRFYDSERHVKDLMEVEGLEEKDHEGIEVPYFDFESMQIATDNFSDANKLGRGGYGPVYKGKLQDGEVVAVKRLSSFSSQGLIEFKNEVVLIAKLQHRNLVRLRGYCIKGDEKILLYEYMPNKSLDSFIFDPEQSVHLDWQMRFDIILGVAREILYLHQDSRLRVIHRDLKTSNILLDKLMQPKISDFGLARIVRSKENEANTERVVGTYGYMSPEYALDGLFSTKSDVFSFGIVVLEIISGKRNTGFYQSSQVPISLLGYAWKQWTENKLIDIMEII 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241692g00008 364 ProSiteProfiles Protein kinase domain profile. 130 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241692g00008 364 FunFam Lectin-domain containing receptor kinase A4.3 206 363 - -
Stsc241692g00008 364 SUPERFAMILY Protein kinase-like (PK-like) 113 353 IPR011009 -
Stsc241692g00008 364 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 73 361 - -
Stsc241692g00008 364 Coils Coil 35 55 - -
Stsc241692g00008 364 SMART serkin_6 130 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241692g00008 364 Gene3D Transferase(Phosphotransferase) domain 1 206 363 - -
Stsc241692g00008 364 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 95 205 - -
Stsc241692g00008 364 Pfam Protein tyrosine and serine/threonine kinase 134 331 IPR001245 GO:0004672|GO:0006468
Stsc241692g00008 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Stsc241692g00008 364 Gene3D Phosphorylase Kinase; domain 1 92 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241692g00008 Stsc-Chr241692 38932 41017 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241692g00008 94 362 Receptor kinase-like Gene Family AT4G05200 57.249 1.13e-104 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc241692g00008 PK_Tyr_Ser-Thr 6.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241692g00008 - - adu:107462016 514.612