Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241692g00003 ATGCCAAATGGCTCCTTAGAGTTTCATCTCTTTCAGAACAACTCCAAGATCATGGACTGGAAAATGAGGTACCAAATTGCGCTCGGCACGGCCAGGGGATTGACTTATCTTCATGATAGCTGTAGAGACTGCATCATACACTGCGATGTCAAGCCTGAGAACATCCTTCTAGATGCTCAATTTTGTCCGAAAGTCGCGGATTTCGGCCTTGCAAAGCTTGTTGGAAGAGAATTCAGCAGGGTCCTTACAACAATGAGAGGAACAAGAGGCTACCTTGCCCCTGAATGGATCTCCGGGGTGCCTATAACTCCCAAAGCAGATGTGTACAGCTACGGAATGATGCTTTTCGAGTTTGTATCCGGCAAGAGGAACTCTGAGCCTTGTGATGATGGGAGGGTGAAGTTCTTCCCTACATGGGCTGCCACTGTTGTATTGGAAGGAGGCAATGTGGTTAGCCTTTTGGATCCTAGGTTGGAGGGAAATGCTGAGGTTGAAGAGGTCACAAGAATAATCAAAGTAGCTTCTTGGTGTGTCCAAGATGATGAATGTCATAGGCCAAGCATGGCTCAGGTTGTTCAGATACTTGAAGGGATCTTGGATGTGGGTTTGCCTCCCATTCCAAGGACACTTCAAGTGTTTGTGGACAACCAGGAGGACATTGTTTTCTTCACTGATTCAAACTCTTCCAACCAGAGCTCACAGGTGAAGAGCACCACCACCACTGTCTCAACAACATCATCTCAACCCAAAAGTAACATCTCTTCAGCAAGCTCCAAGTCCTCGGGAGAAAATTAA 795 0.4679 MPNGSLEFHLFQNNSKIMDWKMRYQIALGTARGLTYLHDSCRDCIIHCDVKPENILLDAQFCPKVADFGLAKLVGREFSRVLTTMRGTRGYLAPEWISGVPITPKADVYSYGMMLFEFVSGKRNSEPCDDGRVKFFPTWAATVVLEGGNVVSLLDPRLEGNAEVEEVTRIIKVASWCVQDDECHRPSMAQVVQILEGILDVGLPPIPRTLQVFVDNQEDIVFFTDSNSSNQSSQVKSTTTTVSTTSSQPKSNISSASSKSSGEN 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241692g00003 264 Pfam Protein kinase domain 2 193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241692g00003 264 SUPERFAMILY Protein kinase-like (PK-like) 1 230 IPR011009 -
Stsc241692g00003 264 PANTHER OS07G0415500 PROTEIN 1 207 - -
Stsc241692g00003 264 SMART serkin_6 1 194 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241692g00003 264 ProSiteProfiles Protein kinase domain profile. 1 199 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241692g00003 264 Gene3D Transferase(Phosphotransferase) domain 1 1 202 - -
Stsc241692g00003 264 MobiDBLite consensus disorder prediction 225 264 - -
Stsc241692g00003 264 ProSitePatterns Serine/Threonine protein kinases active-site signature. 45 57 IPR008271 GO:0004672|GO:0006468
Stsc241692g00003 264 FunFam Serine/threonine-protein kinase 1 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241692g00003 Stsc-Chr241692 11355 12149 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241692g00003 18 205 Receptor kinase-like Gene Family AT5G20050 43.590 1.94e-48 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Stsc241692g00003 Pkinase 3.5e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241692g00003 - - gmx:100810583 394.43