Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241692g00001 ATGGTGAGAACCCCTTACTGTGACAAGAGTAGTGGAATGAGGAAGGGGACGTGGACACCTGAGGAAGACAAGAAGCTGATCGCTTATGTTACTAGGTATGGCTGCTGGAATTGGCGTCTTCTCCCTAAGTTTGCAGGTCTTGAAAGGTGTGGCAAGAGTTGCAGACTTAGGTGGTTGAACTATCTCCGACCCAACATCAAAAGAGGCAACTACTCTCAGCAAGAAGAAGATACTATCATCACACTTCACCAAAAGTTTGGCAATAGATGGTCCTTGATTGCGGCGAATTTGCCAGGAAGAACAGACAACGAGATAAAGAATCACTGGCACACTGCTCTGAAGAAGCGTTTTGAAGACAAGTCATCATCAGCATCATCATCATCAGGCACAAGCAAAAGTAGTAGAACCGGAAAAACTAAAGCTAATTCCAGGTTAAAGAATAATGATAATGAGTCCCCAAGAACACTAATGGAACAAGATTCCAATAATGGTCACTCATCAGAGAACATCAATAATGATACCACATTGTCTTCTCCACAACCATCATCCTCTAGCGGTTTCTCTTGCGCCACAACAGATACTGAAACCGCCGCTATAAACCATGAGGAGGATAATAATTTAATAGGTCTAGAGAATTATAACAATAATGATAATAATGATTATGAGCTTGGTTATTTTGATCCATATGATGAGGCAGTGAGTGGAGATTTCTGGACAGAACCATATCTCATTGACTTTTCCTATGTCCCTCCCAGTAGTCAAGAAACTACTTTGCCCTCTCTGCTTCATGAACCAGAAGAATACTTTCCTAACCCTATTTGGGATATAGAATTCTGGGGCCAGAATAGCTTGTACCTGGAATAA 864 0.4167 MVRTPYCDKSSGMRKGTWTPEEDKKLIAYVTRYGCWNWRLLPKFAGLERCGKSCRLRWLNYLRPNIKRGNYSQQEEDTIITLHQKFGNRWSLIAANLPGRTDNEIKNHWHTALKKRFEDKSSSASSSSGTSKSSRTGKTKANSRLKNNDNESPRTLMEQDSNNGHSSENINNDTTLSSPQPSSSSGFSCATTDTETAAINHEEDNNLIGLENYNNNDNNDYELGYFDPYDEAVSGDFWTEPYLIDFSYVPPSSQETTLPSLLHEPEEYFPNPIWDIEFWGQNSLYLE 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241692g00001 287 CDD SANT 70 111 IPR001005 -
Stsc241692g00001 287 MobiDBLite consensus disorder prediction 122 141 - -
Stsc241692g00001 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Stsc241692g00001 287 SMART sant 67 115 IPR001005 -
Stsc241692g00001 287 SMART sant 14 64 IPR001005 -
Stsc241692g00001 287 Gene3D - 15 67 - -
Stsc241692g00001 287 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 200 - -
Stsc241692g00001 287 MobiDBLite consensus disorder prediction 116 191 - -
Stsc241692g00001 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Stsc241692g00001 287 FunFam MYB-related transcription factor 14 67 - -
Stsc241692g00001 287 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Stsc241692g00001 287 MobiDBLite consensus disorder prediction 154 191 - -
Stsc241692g00001 287 Gene3D - 70 169 - -
Stsc241692g00001 287 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Stsc241692g00001 287 CDD SANT 17 62 IPR001005 -
Stsc241692g00001 287 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Stsc241692g00001 287 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Stsc241692g00001 287 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241692g00001 Stsc-Chr241692 1095 2310 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241692g00001 1 117 MYB Transcription Factor Family AT2G31180 69.231 1.73e-54 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc241692g00001 Myb_DNA-binding 8.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241692g00001 K09422 - qsa:O6P43_000644 256.529