Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241691g00019 ATGAAAAAGATGAGTAGCTGTAGCAGTGGCAACAACAATAGCAAAAGAAGTTCCATTTACAGAGGAGTTACCAGGCATAGGTGGACAGGGAGGTTTGAAGCTCACCTATGGGACAAGAATTCTTGGAACAATATTCAGAGTAAAAAGGGACGACAAGGGGCATATGATACAGAAGAAGCTGCTGCACACTCCTATGATCTTGCTGCTCTAAAGTATTGGGGACCTAATACCATCTTGAATTTTCCGATAGAAACATATGTGAAGGAAATTGAGGAAATGAAGAATGTTTCACAAACTGAATACTTGGCTTCTCTGCGAAGGAGGAGCAGTGGATTTTCAAGAGGTGTTTCCAAGTATCGTGGAGTGGCTAGGCATCACCACAATGGAAGGTGGGAAGCACGAATTGGAAGAGTAAATGGCAACAAGTACCTTTATCTGGGAACCTATACCACTCAAGAAGAGGCAGCAGCAGCTTATGATAGAGCAGCCATAGAGTACAGGGGACTGAATGCGGTTACAAATTTTGACATAAGCAACTACATTGACATAAGCAACTGCAAGACAGATGAACACTCTATGGAAGAAACACATACACAAACACAAACTACTCCATTCTCCATTGAATCTGAAGAAGCAGAAGTGGACACTCCTCCCATGACAATGATGGATCCAGAAAATTTAGGAAATATGCAGAGGGAAGAAGAGCAGCTGGAAACAGACATCAACGGCATACTTAGCCAGGATCTAACGAATTGGGGCTTCATGGATGCCGAGCTATCTGAATTCGACATGAGCGACATTTTTCAGGCAGATGATAGTGGGTTGGAGGATGACATCAACCTTCTTTGTATGGCTGATCCTGATGAGAGTAATTTCAACCTGAACACTATCTTTGATGGACCTGCAAAATGTGTTGGAGACATGATGCATGGAACTGTAGGTGGAGGAGAAATAAGCATGCCACTTCCAGTTATTAAGAAGCAAAAGTTGTTGTCCCCTTTTCCTAATGTGTGA 1014 0.427 MKKMSSCSSGNNNSKRSSIYRGVTRHRWTGRFEAHLWDKNSWNNIQSKKGRQGAYDTEEAAAHSYDLAALKYWGPNTILNFPIETYVKEIEEMKNVSQTEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVNGNKYLYLGTYTTQEEAAAAYDRAAIEYRGLNAVTNFDISNYIDISNCKTDEHSMEETHTQTQTTPFSIESEEAEVDTPPMTMMDPENLGNMQREEEQLETDINGILSQDLTNWGFMDAELSEFDMSDIFQADDSGLEDDINLLCMADPDESNFNLNTIFDGPAKCVGDMMHGTVGGGEISMPLPVIKKQKLLSPFPNV 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241691g00019 337 FunFam AP2-like ethylene-responsive transcription factor 117 178 - -
Stsc241691g00019 337 SUPERFAMILY DNA-binding domain 117 178 IPR016177 GO:0003677
Stsc241691g00019 337 CDD AP2 18 83 IPR001471 GO:0003700|GO:0006355
Stsc241691g00019 337 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Stsc241691g00019 337 PRINTS Ethylene responsive element binding protein signature 158 178 IPR001471 GO:0003700|GO:0006355
Stsc241691g00019 337 Gene3D AP2/ERF domain 117 178 IPR036955 GO:0003700|GO:0006355
Stsc241691g00019 337 Gene3D AP2/ERF domain 19 84 IPR036955 GO:0003700|GO:0006355
Stsc241691g00019 337 Pfam AP2 domain 19 74 IPR001471 GO:0003700|GO:0006355
Stsc241691g00019 337 Pfam AP2 domain 117 168 IPR001471 GO:0003700|GO:0006355
Stsc241691g00019 337 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 14 225 - -
Stsc241691g00019 337 SUPERFAMILY DNA-binding domain 18 84 IPR016177 GO:0003677
Stsc241691g00019 337 SMART rav1_2 19 88 IPR001471 GO:0003700|GO:0006355
Stsc241691g00019 337 SMART rav1_2 118 182 IPR001471 GO:0003700|GO:0006355
Stsc241691g00019 337 ProSiteProfiles AP2/ERF domain profile. 118 176 IPR001471 GO:0003700|GO:0006355
Stsc241691g00019 337 ProSiteProfiles AP2/ERF domain profile. 19 82 IPR001471 GO:0003700|GO:0006355
Stsc241691g00019 337 CDD AP2 117 178 IPR001471 GO:0003700|GO:0006355
Stsc241691g00019 337 FunFam AP2-like ethylene-responsive transcription factor 18 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241691g00019 Stsc-Chr241691 182317 191973 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241691g00019 14 90 AP2-EREBP Transcription Factor Family AT5G57390 41.026 1.65e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Stsc241691g00019 AP2 2.1e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241691g00019 - - aip:107641803 442.58