Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241691g00016 ATGGAAAATGGTATGAGCAGGAAGCAGCAATTTCCTGTACCTGGAGACATCATTAGCATCAGACTAGGTGATATTGTTCCTGCTGATGCTCGTCTTCTTGAGGGTGATCCGTTAAAGATTGATCAATCTGCTCTTACCGGAGAGTCCCTTCCGGTCACCAAGAGTCCAGGGGATGAGGTCTTCTCTGGCTCAACTTGTAAACAAGGTGAAATTGAAGCTGTCGTCATTGCAACCGGTGTCCACACATTCTTCGGCAAGGCGGCTCACCTCGTGGATAGCACCAACCAAGTTGGACACTTCCAGATGGTTCTCACAGCAATTGGAAATTTCTGCATTTGTTTCATTGCTGTTGGTATGTTGGCTGAGATCATAGTCATGTACCCTATTCAGCACCGCAAATATAGAGATGGAATTGACAACCTGTTGGTCCTCTTGATTGGTGGAATCCCCATTGCTATGCCCACCGTGTTGTCTGTCACAATGGCCATTGGCTCTCACAGGCTCTCTCAGCAGGGTGCTATCACCAAGCATGTCCTCTGCAGTGACAAGACTGGGACACTCACCCTGAACAAGCTGAGCGTTGACAGGAACTTGATTGAGGTTTTCGCCAAGGATGTGGACAAGGAACATGTTATCCTTCTTGCTGCAAGGGCTTCCAGGACTGAAAACCAGGATGCAATAGATGCCGCCATTGTTGGAATGCTTGCTGATCCAAAAGAGGCAAGGGCTAGGGTAAGAGAGGTTCACTTCTTGCCATTCAATCCAGTTGACAAGAGAACAGCTTTGACTTACATTGATTCTGATGGAAATTGGCACAGGGCAAACAAAGGTGCTCCTGAACAGATCATTGCCTTGTGTAACCTTAGGGAAGATGCTAAGAAAAAGTGCCATGCTATTATTGACAAGTTCGCAGATCCTGCAAATAGGAGTCTTGTTGATAGCTCCACACCCTTCGGTGAAGCCAGTACAGCCCAGCAGTTTGGTTCTATGGTTCCTGGAACAATTGATGGGAAGTTTGATGGCTGCTATATAGTTAAAGTGGATCTGGGTTCTGAACAAGTGAAAGGTATTTTGTACCATGTTCCCATCAATTTGTCCCAGAGCTCTAATAATGTTGGCATCCATGGTTCACGGAATCCAAAGAAATCTAAATTGGCAAAACATGATCCATCTCGGCCAAAGTCAAACAGGAGTGGCTACAATTTCTTCTTTGCTCAGAACTATGCCAGCTTGAGACCCTTATTCCATGGTCAAGAGAGAGCGATTAGTAAGAGGATTGGGTTTCTATGGAACAATCTGCCAGGAGCAGAAAGACAGGAGAAAGGGCTGAGAGATAAGGAGAGATACAAGACTGAAATGTTGGAGCACAAGTCATCTAATAATTCAGCTCCTCAGTAG 1398 0.4578 MENGMSRKQQFPVPGDIISIRLGDIVPADARLLEGDPLKIDQSALTGESLPVTKSPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQMVLTAIGNFCICFIAVGMLAEIIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKHVLCSDKTGTLTLNKLSVDRNLIEVFAKDVDKEHVILLAARASRTENQDAIDAAIVGMLADPKEARARVREVHFLPFNPVDKRTALTYIDSDGNWHRANKGAPEQIIALCNLREDAKKKCHAIIDKFADPANRSLVDSSTPFGEASTAQQFGSMVPGTIDGKFDGCYIVKVDLGSEQVKGILYHVPINLSQSSNNVGIHGSRNPKKSKLAKHDPSRPKSNRSGYNFFFAQNYASLRPLFHGQERAISKRIGFLWNNLPGAERQEKGLRDKERYKTEMLEHKSSNNSAPQ 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241691g00016 465 Gene3D - 178 191 IPR023214 -
Stsc241691g00016 465 CDD HMG-box_AtHMGB9-like 393 456 - -
Stsc241691g00016 465 Gene3D - 79 177 - -
Stsc241691g00016 465 SUPERFAMILY HMG-box 380 461 IPR036910 -
Stsc241691g00016 465 FunFam - 192 258 - -
Stsc241691g00016 465 NCBIfam HAD-IC family P-type ATPase 6 200 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc241691g00016 465 SUPERFAMILY Calcium ATPase, transduction domain A 13 91 IPR008250 -
Stsc241691g00016 465 ProSitePatterns E1-E2 ATPases phosphorylation site. 182 188 IPR018303 -
Stsc241691g00016 465 FunFam Phospholipid-transporting ATPase IC 177 189 - -
Stsc241691g00016 465 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 186 322 IPR023299 GO:0000166
Stsc241691g00016 465 Gene3D - 13 78 - -
Stsc241691g00016 465 Gene3D High mobility group box domain 376 464 IPR036910 -
Stsc241691g00016 465 Gene3D - 192 320 IPR023299 GO:0000166
Stsc241691g00016 465 MobiDBLite consensus disorder prediction 369 397 - -
Stsc241691g00016 465 Pfam E1-E2 ATPase 13 170 - -
Stsc241691g00016 465 PRINTS P-type cation-transporting ATPase superfamily signature 334 353 - -
Stsc241691g00016 465 PRINTS P-type cation-transporting ATPase superfamily signature 41 55 - -
Stsc241691g00016 465 PRINTS P-type cation-transporting ATPase superfamily signature 180 194 - -
Stsc241691g00016 465 PANTHER CALCIUM-TRANSPORTING ATPASE 13 314 - -
Stsc241691g00016 465 SUPERFAMILY Calcium ATPase, transmembrane domain M 91 177 IPR023298 -
Stsc241691g00016 465 FunFam Plasma membrane ATPase 4 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241691g00016 Stsc-Chr241691 159259 161360 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241691g00016 13 388 Primary Pumps ATPases AT5G57350 67.513 5.40e-177 519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241691g00016 K01535 - tcc:18589272 540.036