Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241691g00005 ATGTTCCAGAGAAGGTTTATCATCAGACGAAGGAACCAGCAGGCTTCAAGTCTTTGGACCAAACAAATTGGAAGAGAAAAAGGAAAGCAAGTTTCTGAAGTTCTTGGGTTTTATGTGGAATCCATTATCATGGGTCATGGAAGCTGCTGCCATTATGGCCATTGCTCTTGCAAATGGTGGAGGAAGGCCANNNNNNNNNNCATTGCTCTCTTGCTCATTAACTCCACAATCAGTTTCATTGAGGAAAACAATGCTGGTAATGCAGCTGCTGCACTCATGGCTGGTTTAGCCCCCAAAACCAAGGTTCTGAGAGATGGAAGATGGACTGAACAAGATGCTGCTATTTTGGTCCCAGGAGACATAATCAGCATCAAATTGGGAGATATCATCCCGGCCGATGCACGGCTTCTGGAGGGTGATGCTCTGAGTGTTGATCAGTCTGCCTTAACTGGAGAATCTCTTCCGGCGACGAAGAACCCTCATGATGAGGTGTTTTCTGGGTCAACTGTTAAGAAGGGTGAGATTGAAGCAGTTGTTATTGCCACAGGTGTCCACACCTTCTTTGGTAAAGCGGCTCATCTAGTTGACAGCACCAACCAAGTTGGTCACTTCCAGAAAGTTCTTACAGCCATTGGTAACTTCTGCATTTGCTCAATTGCTGTTGGGATAGTCATTGAGCTCATAGTCATGTATCCTATTCAGCATAGAAAGTACAGGGATGGGATTGATAACCTTTTGGTTCTCTTGATTGGAGGGATCCCTATTGCAATGCCAACTGTGTTGTCTGTCACTATGGCTATTGGTTCTCACAGGCTTTCCCAGCAAGGTGCAATCACAAAGAGAATGACAGCTATTGAGGAAATGGCGGGTATGGATGTTCTCTGCAGTGACAAAACTGGGACTCTCACACTCAACAAGCTGACTGTTGATAAAAACCTGATTGAGGTTTTTGCAAAGGGTGTTGAGAAGGATCATGTTATCCTTCTTGCTGCAAGGGCTTCTAGGACTGAGAATCAAGATGCTATAGATGCTGCAATCGTTGGTATGCTTGCTGACCCAAAGGAGGCAAGAGCTGGAATCAGGGAGGTCCATTTTCTCCCTTTCAATCCTGTAGACAAGAGGACTGCTCTAACTTACATTGATTCTGATGGAAATTGGCATAGATCCAGCAAAGGTGCTCCTGAGCAGATATTGAACCTCTGCAACTGCAAAGAGGATGTGAGGAGAAAGGCTCATGCAACTATTGATAAGTTTGCTGAGCGCGGGCTCCGATCTTTGGGGGTTGCTAGACAGGAAGTACCTGAGAAATCAAAAGATGCTCCTGGTGCACCATGGCAATTTGTTGCACTGCTACCATTGTTTGATCCTCCCAGGCATGATAGTGCTGAAACCATCACAAGAGCCTTGAACCTTGGTGTGAATGTTAAAATGATTACTGGGGATCAGCTTGCTATTGCCAAGGAAACTGGAAGAAGGCTTGGGATGGGAACAAACATGTACCCTTCATCCTCTTTGCTTGGCCAAAGCAAGGATGCTGCAGTTTCAGCTCTTCCAGTTGATGAGTTGATTGAGAAAGCTGATGGATTTGCTGGGGTGTTTCCTGAACACAAATATGAAATTGTTAAGAGGCTGCAAGAGAGGAAGCATATATGTGGAATGACAGGTGATGGTGTGAACGACGCCCCTGCATTAAAGAGAGCAGATATTGGAATTGCTGTTGCTGATGCTACAGATGCTGCAAGAAGTGCTTCTGATATTGTCCTCACTGAACCTGGTCTTAGTGTCATTATTAGTGCAGTCCTCACAAGTAGGGCAATTTTCCAAAGGATGAAGAACTATACCATATATGCAGTGTCAATCACCATTCGTATTGTGTTTGGTTTCATGTTTATTGCATTGATTTGGAAGTTCGATTTTGCACCCTTTATGGTGCTGATCATTGCCATACTAAATGATGGTACCATCATGACAATATCCAAGGATAGAGTGAAACCATCCCCACAACCTGATAGCTGGAAACTGAAGGAGATATTTGCTACTGGTGTTGTGCTTGGAAGTTACATGGCACTAATGACAGTAGTATTTTTCTGGCTTATGAAGGACACTGACTTCTTCTCGGACAAGTTTGGTGTAAGGTCTCTGAGACACAGCCCTTCAGAAATGATGGCAGCCCTTTACCTACAAGTCAGTATTATAAGCCAGGCACTGATCTTCGTCACTAGGTCCCGCAGCTGGTCTTATGTTGAAAGACCTGGTCTTCTTCTACTTGGTGCTTTCATGATTGCTCAGCTGGTGGCAACTGCTCTTGCAGTATATGCTAACTGGAGCTTTGCAAGAATCAAGGGAATGGGATGGGGTTGGGCTGGTGTAATCTGGCTCTACAGTTTAGTCACTTATATCCCTCTTGATTTGCTTAAATTCGCAATCCGCTATGCTCTCAGTGGCAAGGCCTGGGATAATCTTTTGGAGAACAAGACTGCATTCACCACAAAGAAAGACTATGGAAAAGAAGAGAGAGAGGCACAATGGGCTGCAGCACAGAGAACTCTTCATGGTCTTCAGCCACCAGAAACAACCAATCTTTTCAATGACAAGAACAGCTACAGGGAGCTTTCAGAGATTGCTGAGCAAGCAAAGAGACGTGCTGAGGTTGCAAGGCTGAGGGAGCTTCACACTCTAAAGGGTCATGTTGAGTCAGTGGTGAAGCTGAAGGGACTTGACATTGATACAATCCAACAGCATTACACTGTTTGA 2754 0.447 MFQRRFIIRRRNQQASSLWTKQIGREKGKQVSEVLGFYVESIIMGHGSCCHYGHCSCKWWRKAXXXXIALLLINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGRWTEQDAAILVPGDIISIKLGDIIPADARLLEGDALSVDQSALTGESLPATKNPHDEVFSGSTVKKGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGIVIELIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFAKGVEKDHVILLAARASRTENQDAIDAAIVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDSDGNWHRSSKGAPEQILNLCNCKEDVRRKAHATIDKFAERGLRSLGVARQEVPEKSKDAPGAPWQFVALLPLFDPPRHDSAETITRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGQSKDAAVSALPVDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKRADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFAPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFATGVVLGSYMALMTVVFFWLMKDTDFFSDKFGVRSLRHSPSEMMAALYLQVSIISQALIFVTRSRSWSYVERPGLLLLGAFMIAQLVATALAVYANWSFARIKGMGWGWAGVIWLYSLVTYIPLDLLKFAIRYALSGKAWDNLLENKTAFTTKKDYGKEEREAQWAAAQRTLHGLQPPETTNLFNDKNSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241691g00005 917 SUPERFAMILY Calcium ATPase, transmembrane domain M 68 813 IPR023298 -
Stsc241691g00005 917 Coils Coil 868 888 - -
Stsc241691g00005 917 FunFam ATPase 4 plasma membrane-type 539 781 - -
Stsc241691g00005 917 PRINTS H+-transporting ATPase (proton pump) signature 726 747 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc241691g00005 917 PRINTS H+-transporting ATPase (proton pump) signature 554 570 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc241691g00005 917 PRINTS H+-transporting ATPase (proton pump) signature 526 542 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc241691g00005 917 PRINTS H+-transporting ATPase (proton pump) signature 411 429 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc241691g00005 917 PRINTS H+-transporting ATPase (proton pump) signature 585 610 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc241691g00005 917 Gene3D - 292 591 IPR023214 -
Stsc241691g00005 917 CDD P-type_ATPase_H 68 807 IPR006534 GO:0008553|GO:0016020|GO:0120029
Stsc241691g00005 917 Gene3D - 68 781 - -
Stsc241691g00005 917 ProSitePatterns E1-E2 ATPases phosphorylation site. 297 303 IPR018303 -
Stsc241691g00005 917 Pfam haloacid dehalogenase-like hydrolase 291 568 - -
Stsc241691g00005 917 FunFam Plasma membrane ATPase 307 454 - -
Stsc241691g00005 917 Pfam E1-E2 ATPase 97 274 - -
Stsc241691g00005 917 FunFam Plasma membrane ATPase 98 182 - -
Stsc241691g00005 917 SFLD Haloacid Dehalogenase 277 605 - -
Stsc241691g00005 917 PRINTS P-type cation-transporting ATPase superfamily signature 145 159 - -
Stsc241691g00005 917 PRINTS P-type cation-transporting ATPase superfamily signature 471 481 - -
Stsc241691g00005 917 PRINTS P-type cation-transporting ATPase superfamily signature 554 573 - -
Stsc241691g00005 917 PRINTS P-type cation-transporting ATPase superfamily signature 295 309 - -
Stsc241691g00005 917 PRINTS P-type cation-transporting ATPase superfamily signature 449 460 - -
Stsc241691g00005 917 PRINTS P-type cation-transporting ATPase superfamily signature 577 589 - -
Stsc241691g00005 917 FunFam Plasma membrane ATPase 448 602 - -
Stsc241691g00005 917 Gene3D - 866 917 - -
Stsc241691g00005 917 Gene3D - 307 454 IPR023299 GO:0000166
Stsc241691g00005 917 PANTHER CALCIUM-TRANSPORTING ATPASE 38 849 - -
Stsc241691g00005 917 SFLD p-type atpase 277 605 IPR044492 -
Stsc241691g00005 917 NCBIfam HAD-IC family P-type ATPase 529 644 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc241691g00005 917 NCBIfam HAD-IC family P-type ATPase 68 315 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc241691g00005 917 SUPERFAMILY Calcium ATPase, transduction domain A 98 195 IPR008250 -
Stsc241691g00005 917 Gene3D - 98 182 - -
Stsc241691g00005 917 NCBIfam plasma-membrane proton-efflux P-type ATPase 67 772 IPR006534 GO:0008553|GO:0016020|GO:0120029
Stsc241691g00005 917 SUPERFAMILY HAD-like 291 601 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241691g00005 Stsc-Chr241691 52737 59075 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241691g00005 68 917 Primary Pumps ATPases AT2G18960 85.059 0.0 1471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241691g00005 K01535 - gmx:547525 1581.62