Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241691g00003 ATGGATGACTATTCTGGAAAAAGAGCAATTGATGGGGTGGTAGTCCCTAGAAAAGGGATGGGCCATTTGTTTAGAGATTCTGCAAATACAAGAGATAGAAATGGTCAAGTGTGCAGCCGGCTAGGTTGCAGTAGTAAAGTCAACTCTACTAAAGGTTCTCAAATTGGTTCTTCTGAAAAGGGTAAATCTTTGAGAACTTCTTTTCGAGCAACTTCAGGTGGTAAGGAAGCAATTGGAAGTTCCTCCAGGACTTTCACTGGGAATAACAACTCAGGAAAATCGCATACAAAGCCTCGGAAGACATTATCATCTCAATTAGAGACGGATTCATCAGAAACTAGTAGCGTACAAGATGAGCCAGAAGTTTCAAATCTTGTCTCTCCACCTGAAAACTTTCGGAGAGTGCCTCAAGCAGAAGTGGAAAATGTAGGATCCAGTAGTGTCGTGCAGATGGAAGTAGGGAGCTCTAGTGTAGCATCATCTAATACAGGATCTCGGAGGAATTTCCATCCAAAGCCTGGTTTGCGCGGTCAAGAAACAAAAGGCGGTGGTGCAGCAACACGACCAGGGACCAGTAGGTACGGATTAAGAAACCTCAGATGCAACTCTATATCCGATGTCGTCCCTGCTGGCTTTCCACCAACAGACTCAGCCAATAATAGAAGAAAGGATACGGTAAAAAAGAGAAATTGTGAAGGGGAAAGTAGTTCAACAGCTAGAGGGAAGAAGATCAATGGTTCTTCATTAGAAGTACGGAATTCTGGTCCCAGAAATGGTATATCCATCTCTGATTCAAGAAGACCCAGAAATACGCCTTCGAATAATAGGGACAGGCCAGACAGCAATCTAATGTCAGTCAGAACACGGAGGCCGGCTAATGGTAATGGGAGGGGAAGACTTTCTAACCAAAGTAATGCTAATCCTGTGGCATCGAATGAGCCTGTTGTCATGATACCTACTTTGCCTCATTCGGGTGATCATAATGCTCCTGGTGGTGTATTGCATCTTACTTCTTTGGAGTCTCCTTTAAGCCGTCCTGCCTCTTACAGTAGACCTGGTAGTAGCAGCGATGAACTGTATGGTATTATGCCTATGTCTCCCACGGAATATGGCATCACTCATTCTCTTATAAATCGGGATAGCTTTCGGCGACGCTATAACATGGATGGTATTGCAGAGGTATTGCTGGCACTTGAGAGGATTGAACAAGATGTTGAGCTAACACACGAGCAAATTCTTTTACTTGAGTCGAACTTGCTCCTCACTGGACTAAACTTCTATGATCAACATAGAGACATGCGGTTGGACATTGATAACATGTCATATGAGGAACTATTAGCTTTGGAAGAGAGGATGGGTTCTGTGAGCACAGCACTAACAGAGGAAGCATTATCAGAGTGCCTAAAGAGAAATATCTTCCAATCCTTGCCTTCAGATGATGTAACTGAGACCTGCAATGGGAATAAGAATAAGGACGATATCAAATGCAGCATCTGCCAGGAGGAATATGTGGTTGGAGATGAGGTGGGGAATCTGCAATGTCAGCATATGTACCATGTGGTTTGCATACAACAATGGCTGAGGCTCAAGAACTGGTGCCCTATTTGCAAAGCATCAGTGGCAAAGTCATCTACCCCGTCGCTGCCGCCGCCTTCGTCGTCACCTTCATCCCATTGA 1677 0.4448 MDDYSGKRAIDGVVVPRKGMGHLFRDSANTRDRNGQVCSRLGCSSKVNSTKGSQIGSSEKGKSLRTSFRATSGGKEAIGSSSRTFTGNNNSGKSHTKPRKTLSSQLETDSSETSSVQDEPEVSNLVSPPENFRRVPQAEVENVGSSSVVQMEVGSSSVASSNTGSRRNFHPKPGLRGQETKGGGAATRPGTSRYGLRNLRCNSISDVVPAGFPPTDSANNRRKDTVKKRNCEGESSSTARGKKINGSSLEVRNSGPRNGISISDSRRPRNTPSNNRDRPDSNLMSVRTRRPANGNGRGRLSNQSNANPVASNEPVVMIPTLPHSGDHNAPGGVLHLTSLESPLSRPASYSRPGSSSDELYGIMPMSPTEYGITHSLINRDSFRRRYNMDGIAEVLLALERIEQDVELTHEQILLLESNLLLTGLNFYDQHRDMRLDIDNMSYEELLALEERMGSVSTALTEEALSECLKRNIFQSLPSDDVTETCNGNKNKDDIKCSICQEEYVVGDEVGNLQCQHMYHVVCIQQWLRLKNWCPICKASVAKSSTPSLPPPSSSPSSH 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241691g00003 558 FunFam E3 ubiquitin-protein ligase arkadia 456 542 - -
Stsc241691g00003 558 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 481 549 IPR013083 -
Stsc241691g00003 558 MobiDBLite consensus disorder prediction 140 168 - -
Stsc241691g00003 558 SMART ring_2 496 536 IPR001841 -
Stsc241691g00003 558 Coils Coil 398 418 - -
Stsc241691g00003 558 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 74 541 IPR045191 GO:0061630
Stsc241691g00003 558 MobiDBLite consensus disorder prediction 220 236 - -
Stsc241691g00003 558 MobiDBLite consensus disorder prediction 24 336 - -
Stsc241691g00003 558 SUPERFAMILY RING/U-box 488 543 - -
Stsc241691g00003 558 ProSiteProfiles Zinc finger RING-type profile. 496 537 IPR001841 -
Stsc241691g00003 558 MobiDBLite consensus disorder prediction 237 311 - -
Stsc241691g00003 558 Pfam Ring finger domain 495 537 IPR001841 -
Stsc241691g00003 558 MobiDBLite consensus disorder prediction 30 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241691g00003 Stsc-Chr241691 36199 40924 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241691g00003 391 543 C3H Transcription Factor Family AT2G15530 40.523 8.15e-33 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241691g00003 - - gmx:100819874 754.207