Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241690g00024 ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAAGCGGCACTCAAAGCTGGAGTAGTCAAACATGGAGCTGGAAAATGGCGAACAATACTTACAGACCCAGAGTTCAGCGCCATTCTGCGCATGCGATCAAATGTGGATCTCAAGGACAAATGGAGGAATATAAATGTGACAGCAATATGGGGATCCAGGCAAAAAGCAAAGCTTGCCCTAAAAAAGAACTTACCAACTCCGAAATTCGATGGTAACCACATGGCCATAAGTACTGTAGTTCAACAGGGTGAAGTTGCTGATCCTAAGCCTCTAGCAGTTTCTGGTGGAGCATCACAATCTCCTAATTCAAAAGAACAACTATCAAGGTTGGATACTCTTATACTAGAGTCCATTATCAAGTTAAAAGAGCCGAAAGGTTCCGACCGGGCTGCCATTGCTGCTTATATAGAGGATCAATACTCATCTCCTCCAAACCTCAGAAAGTTACTGTCAGCAAAACTGAAGCATATGGTGGCCAGTGGCAAGCTAATGAAGGTAAAGCATAAGTACAGAATTACAGCAAATTCAACAATCTCTGAGAAGAGAAGAGGCTCTTCCTTGTTACTTCTGGAAGGAAGGCCAAAAGACTCTCCCAAATCAGATAAGACTGATGTCAGCATCCTTTCAAAATCCCAAATTGATGCAGAGCTATCAAAAATGAAAGGTGTGACAGCTCAAGAAGCAGCAGCAGCAGCTGCAAAAGCAGTTGCAGAAGCGNNNNNNNNNNTTGCTGAGGCTGAGGCAGCAGCTAGGGAGGCAGAAGCTGCAGAAGCTGAAGCAGAGGCTGCACGGGTATTTGCAAAAGCAGCAATGAAAGCACTAAAATGCAAAGCGCTTCATATCTGA 882 0.441 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFSAILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNLPTPKFDGNHMAISTVVQQGEVADPKPLAVSGGASQSPNSKEQLSRLDTLILESIIKLKEPKGSDRAAIAAYIEDQYSSPPNLRKLLSAKLKHMVASGKLMKVKHKYRITANSTISEKRRGSSLLLLEGRPKDSPKSDKTDVSILSKSQIDAELSKMKGVTAQEAAAAAAKAVAEAXXXXAEAEAAAREAEAAEAEAEAARVFAKAAMKALKCKALHI 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241690g00024 293 PANTHER SINGLE MYB HISTONE 4 1 289 IPR044597 GO:0003691
Stsc241690g00024 293 Coils Coil 256 275 - -
Stsc241690g00024 293 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Stsc241690g00024 293 SUPERFAMILY "Winged helix" DNA-binding domain 118 195 IPR036390 -
Stsc241690g00024 293 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 118 186 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc241690g00024 293 Coils Coil 237 251 - -
Stsc241690g00024 293 CDD SANT_TRF 6 57 - -
Stsc241690g00024 293 SMART h15plus2 116 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc241690g00024 293 Pfam linker histone H1 and H5 family 123 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc241690g00024 293 Gene3D - 2 59 - -
Stsc241690g00024 293 Gene3D - 115 197 IPR036388 -
Stsc241690g00024 293 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Stsc241690g00024 293 SUPERFAMILY Homeodomain-like 2 66 IPR009057 -
Stsc241690g00024 293 SMART sant 4 59 IPR001005 -
Stsc241690g00024 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Stsc241690g00024 293 FunFam Telomere repeat-binding factor 1 2 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241690g00024 Stsc-Chr241690 159942 164679 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241690g00024 1 289 Single Myb Histone (SMH) Gene Family AT5G67580 54.266 1.70e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc241690g00024 Linker_histone 1.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241690g00024 K09422 - gmx:100796539 394.43